Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01940 94 / 2e-24 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G25250 76 / 2e-17 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT3G48550 72 / 3e-17 unknown protein AT1G68130 72 / 4e-16 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031314 [exp] 152 / 1e-45 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10042288 [exp] 95 / 2e-25 AT2G01940 112 / 4e-29 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10026369 [exp] 90 / 1e-22 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033100 [exp] 107 / 1e-28 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 106 / 2e-28 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.010G101200 [exp] 103 / 1e-27 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.008G140400 [exp] 102 / 7e-27 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.012G097901 [exp] 76 / 1e-18 AT3G48550 142 / 8e-44 unknown protein Potri.015G096500 [exp] 75 / 3e-18 AT3G48550 145 / 4e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031883 pacid=23180644 polypeptide=Lus10031883 locus=Lus10031883.g ID=Lus10031883.BGIv1.0 annot-version=v1.0 ATGAGGCTTGCGATTGTGGAGAAGGCGTACGCGGAGGAGGTGAGGAAGGAGGCGAAGCGGCAGATACAGCTGGCGGAGGAGGAGTTCGCCAACGCGAAGA GGATACGTCAGCGTGCCCAGGCTGAGCTGGACAAGGCGGAGGTGTTGAAAGAGCACGCCATGAAGCAGATGAACACGACCATACTCCAGCTCACCTGCGC CAGCTGTCGGCAGAAGTTGCTGATGCGGCAGCCCGGGGCCGGGGGCGGCCGTGAGGTGGCGTTGGGGTGGGGCGTGTGGGTTGAGCTACGTGTCGTCGGG GATTACTGA
AA sequence Show only first row Show all	>Lus10031883 pacid=23180644 polypeptide=Lus10031883 locus=Lus10031883.g ID=Lus10031883.BGIv1.0 annot-version=v1.0 MRLAIVEKAYAEEVRKEAKRQIQLAEEEFANAKRIRQRAQAELDKAEVLKEHAMKQMNTTILQLTCASCRQKLLMRQPGAGGGREVALGWGVWVELRVVG DY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040731 [exp]	1.4	0.8414
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10007245 [exp]	2.2	0.8587
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	4.6	0.8210
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	7.2	0.8124
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10017542 [exp]	7.3	0.7904
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	8.1	0.8058
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	8.8	0.7919
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	11.5	0.8006
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	15.0	0.7231
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	19.4	0.7543

Compare expression of checked genes

Lus10031883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.