Plant FIBer expression Database

Lus10031884 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14687 38 / 0.0003 ZF_HD ATHB32, ZHD14 ZINC FINGER HOMEODOMAIN 14, homeobox protein 32 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031315
[exp]
58 / 1e-11 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G040900
[exp]
47 / 1e-07 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
Potri.015G032700
[exp]
47 / 2e-07 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04770 ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence
>Lus10031884 pacid=23180586 polypeptide=Lus10031884 locus=Lus10031884.g ID=Lus10031884.BGIv1.0 annot-version=v1.0
ATGGAAGGAGAAGTAGACGCCGAAGTGTACAAAGAATGCCTAAGGAACCATGCAGCCAGCCTCGGTAGCTACGCCACCGGCGGCTGGGGGGGGGTGAGTT
CACCCTTTCCTTTTTCTCTTCCTCTTCCTCCGTCGCCGCCCCCCTCCAATGCGCCGCCTGTGGCTGCCACCGCAACTTCCACCGCAAAGTCAACAACAAC
CAAACCAACCCCAGCCTCCTCCTCACCAGTGCCGCCATCGAGCATGACCAATATCAGATTGCGGCAGTAG
AA sequence
>Lus10031884 pacid=23180586 polypeptide=Lus10031884 locus=Lus10031884.g ID=Lus10031884.BGIv1.0 annot-version=v1.0
MEGEVDAEVYKECLRNHAASLGSYATGGWGGVSSPFPFSLPLPPSPPPSNAPPVAATATSTAKSTTTKPTPASSSPVPPSSMTNIRLRQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10031884
[exp]
0 1
AT5G38650 Proteasome maturation factor U... Lus10005377
[exp]
1.4 0.9358
AT1G75240 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, hom... Lus10031315
[exp]
1.4 0.9613
AT1G08570 ACHT4 atypical CYS HIS rich thiored... Lus10015711
[exp]
6.0 0.9185
AT1G75240 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, hom... Lus10031885
[exp]
6.0 0.9270
AT4G23820 Pectin lyase-like superfamily ... Lus10003890
[exp]
6.2 0.9286
AT4G34810 SAUR-like auxin-responsive pro... Lus10026294
[exp]
6.9 0.9196
AT3G28040 Leucine-rich receptor-like pro... Lus10035687
[exp]
9.2 0.9262
AT5G51520 Plant invertase/pectin methyle... Lus10031712
[exp]
11.0 0.9254
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Lus10015153
[exp]
12.8 0.9177
AT3G50330 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-hel... Lus10042647
[exp]
12.8 0.9038

Lus10031884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.