Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18350 62 / 5e-13 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT3G50890 56 / 6e-11 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT1G75240 56 / 2e-10 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT5G39760 52 / 2e-09 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT3G28920 52 / 3e-09 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT1G14440 50 / 1e-08 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT5G15210 47 / 9e-08 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT5G65410 47 / 1e-07 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT2G02540 46 / 3e-07 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT4G24660 43 / 4e-06 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031315 [exp] 98 / 5e-27 AT1G75240 137 / 9e-40 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 61 / 2e-12 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10014302 [exp] 51 / 5e-09 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10030473 [exp] 50 / 5e-09 AT5G39760 65 / 3e-13 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10012827 [exp] 50 / 9e-09 AT3G28920 91 / 6e-22 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Lus10026010 [exp] 50 / 1e-08 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10037175 [exp] 49 / 2e-08 AT1G75240 86 / 2e-20 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10010694 [exp] 49 / 5e-08 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 48 / 7e-08 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040900 [exp] 68 / 1e-15 AT4G24660 143 / 4e-43 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.015G032700 [exp] 66 / 9e-15 AT1G69600 137 / 2e-40 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.002G035200 [exp] 59 / 6e-12 AT1G14440 169 / 2e-50 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.007G024100 [exp] 57 / 5e-11 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.005G227900 [exp] 55 / 2e-10 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.005G122500 [exp] 55 / 2e-10 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.010G169400 [exp] 52 / 4e-09 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.003G000400 [exp] 51 / 4e-09 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G229600 [exp] 50 / 7e-09 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.017G082900 [exp] 49 / 2e-08 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031885 pacid=23180636 polypeptide=Lus10031885 locus=Lus10031885.g ID=Lus10031885.BGIv1.0 annot-version=v1.0 ATGACGGAGTTCGCTGAGAAGATCGGATGGCGACTGACTCGGGTTACGAACAAGGAGGAAGATGAAGTGGAGAGGTTTTGCAGAGGAGTTGGAATCAGCA GGCAGGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCATCTTCTTCTTCTACTACCACCACCACAAATAATCACTATGATTCTTCTAATGATCATCA CAATGTTGCTAGTTTTAGTGCTAGAACCTCATCTCTTACCACTCAATGA
AA sequence Show only first row Show all	>Lus10031885 pacid=23180636 polypeptide=Lus10031885 locus=Lus10031885.g ID=Lus10031885.BGIv1.0 annot-version=v1.0 MTEFAEKIGWRLTRVTNKEEDEVERFCRGVGISRQVFKVWMHNHKNSSSSSTTTTTNNHYDSSNDHHNVASFSARTSSLTTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	0	1
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	1.7	0.9546
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	2.8	0.9522
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	4.0	0.9424
					Lus10031884 [exp]	6.0	0.9270
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	6.5	0.9438
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	7.5	0.9281
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	7.7	0.9362
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	7.9	0.9037
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	8.4	0.9335
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	11.0	0.9040

Compare expression of checked genes

Lus10031885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.