Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73380 352 / 4e-118 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031316 [exp] 763 / 0 AT1G73380 395 / 7e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067200 [exp] 412 / 6e-141 AT1G73380 421 / 2e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF07000 [flax] [poplar] DUF1308 Protein of unknown function (DUF1308)
Representative CDS sequence Show only first row Show all	>Lus10031887 pacid=23180764 polypeptide=Lus10031887 locus=Lus10031887.g ID=Lus10031887.BGIv1.0 annot-version=v1.0 ATGAAGACCACCACGGCGGCGACGGCGGAGATGGAGGAAGAGATCAAATCGGCGAGCGTAAGGTGCAAGAGAGTGATAGAGAGAGTCGGAAGATTACCTC CGAGCACCAACATCACTGATTCATGCAAGCGTACTCTTCTGAAGCTCGCCAACTCCGAGCTCAACTTCCTCTGCCGCTCTTTCTCATCCCTCGATTCATC TCCTCCTCCGCCGCTCAGTGTAAACATTGGCCATTTGGAGGCAGTGGTTCACATTCTGGAGCAGCCATTCGTGACAGGAGTTTCCAGGGTTTGCAAGAGA GTCTCTCTTGCACCTCCAGGATCTCGAAACACGAACACTGCACCTTCCGGTGTTGTCCATGTCGATGTAGTGTGTACATTGAACAAGAAGCCAGTGTGGA TCATTGTCTCGGACCGGAATCCTAGCTACGTCTACTGGCATGGCTACCGCAGGGATACAGGTTTGAAATTGAGGATCGAACAAGTCTTAGTTGCTGCTAC TCGATCTACCAAGACGATGAAGCCTCGTTCGATCGTCCTCTTCTTCCCTCGTGGGGTTGGTGGATCTGTTGGGGAGAATCTTCAGGATGAATTCAGGGCC TGTAAGTTTCAGCTGGAGTTGGATGACTTATATCCTGAAGCTTCTTCGTTTGAGATAAAGCTCGACACTGATGAGTATCCAGTTAATTCACCTAGGCCGG ATCGTCCCCAAGAGCTGGTTCCACAGGATGAACATCCGAAACTGAAGCCAGAAGATGGTTTTCGTTCTCTAGTCTCGGGGATGAAGAGGTGGTCTCGAGA ATTACGAGCTATGGACCCGTCTGATACAGGTGCTTTCCAAGGCATTGATGATGACATTCTGAATTACAGCACTACAGCATTGATTGCTATTGTATCTGGA ATAAGCAACGGCTGTGCGGAGAAGCTTCTTTCGACACCAGAATGTCGACTGAGACAGCAATTTAAAGGGAACACCGAGTTCGTAATGTCTGAGATCCAGA AGCCATTGCTTGCTGAGCTGGCACCTCTTCTATCCGGGAAGAGAGGCATCGTATGTGTTAGCGTCGTTTTGGAGTTCGAAGAGTTGGTATCTATGTTTGC AGGGGCGAATGAGAGGGTTCGCGCTCGTAAGCTGCTCGAGTGTCTCCTGGTGGTGCCAGACAGTCCTTCGGAGCGAATGGCGGGCCTGCCAACCACGAGG AAGCTAGATTCGAAGAGCAAGATCGTGTTCGGGACCGGTGACAGCTGGCGTGCTCCGACGTTGACTGCCAACATGGCCTTCGCTCGAGCTGTGTCGCAGA CGGGAATGTCGTTGTTCACCATCGGGCATCGGCCTAGGGCTTTGATCGGCGATTGA
AA sequence Show only first row Show all	>Lus10031887 pacid=23180764 polypeptide=Lus10031887 locus=Lus10031887.g ID=Lus10031887.BGIv1.0 annot-version=v1.0 MKTTTAATAEMEEEIKSASVRCKRVIERVGRLPPSTNITDSCKRTLLKLANSELNFLCRSFSSLDSSPPPPLSVNIGHLEAVVHILEQPFVTGVSRVCKR VSLAPPGSRNTNTAPSGVVHVDVVCTLNKKPVWIIVSDRNPSYVYWHGYRRDTGLKLRIEQVLVAATRSTKTMKPRSIVLFFPRGVGGSVGENLQDEFRA CKFQLELDDLYPEASSFEIKLDTDEYPVNSPRPDRPQELVPQDEHPKLKPEDGFRSLVSGMKRWSRELRAMDPSDTGAFQGIDDDILNYSTTALIAIVSG ISNGCAEKLLSTPECRLRQQFKGNTEFVMSEIQKPLLAELAPLLSGKRGIVCVSVVLEFEELVSMFAGANERVRARKLLECLLVVPDSPSERMAGLPTTR KLDSKSKIVFGTGDSWRAPTLTANMAFARAVSQTGMSLFTIGHRPRALIGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73380			unknown protein		Lus10031887 [exp]	0	1
AT1G73380			unknown protein		Lus10031316 [exp]	6.7	0.8743
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	9.6	0.8735
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	9.7	0.8371
AT1G26380			FAD-binding Berberine family p...		Lus10038437 [exp]	12.8	0.8005
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	21.5	0.8238
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	25.6	0.8401
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	32.0	0.7711
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	34.6	0.8306
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10028627 [exp]	40.8	0.8325
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	41.0	0.8343

Compare expression of checked genes

Lus10031887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.