Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54540 192 / 4e-61 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G65690 146 / 4e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 146 / 5e-43 NHL25 NDR1/HIN1-like 25 (.1) AT2G27080 89 / 7e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 67 / 4e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 52 / 5e-08 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 51 / 1e-07 NHL2 NDR1/HIN1-like 2 (.1) AT3G44220 48 / 1e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 47 / 3e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 46 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031317 [exp] 311 / 1e-107 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 146 / 9e-43 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 142 / 3e-41 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10033705 [exp] 84 / 5e-19 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031635 [exp] 81 / 6e-18 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026762 [exp] 56 / 4e-10 AT2G27080 110 / 5e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10025548 [exp] 54 / 3e-09 AT2G27080 107 / 1e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10016960 [exp] 54 / 1e-08 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 53 / 2e-08 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154000 [exp] 219 / 3e-71 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 206 / 1e-66 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 162 / 5e-49 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.012G145500 [exp] 147 / 3e-43 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.013G135800 [exp] 109 / 7e-29 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 101 / 1e-25 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 98 / 4e-24 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.019G102500 [exp] 92 / 4e-23 AT1G65690 78 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G166600 [exp] 65 / 2e-12 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G003800 [exp] 62 / 1e-11 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10031888 pacid=23180569 polypeptide=Lus10031888 locus=Lus10031888.g ID=Lus10031888.BGIv1.0 annot-version=v1.0 ATGGCAACTCATGAAGCAACATATCATAGAATCCACCCAATCCCACCGCCGCCGCCGTCCGCCGTCGAATCACCACCGTCCGGTGATCCTCCTCCATCCA ACCACAAACCCCCCTCCGCTCCACCGCCACCAATGAAGCCAAGGAAACCCAACACCAGATGCATGTGCAAGTGCGTGTGCTGGACGCTCGTCATCCTCCT CATCCTAGCCGTCGCCGTCGCCGCCTCCGCGGCAACAATCTACCTCGTGTTCAAACCCAAGGTCCCCAAATACTCCGTCGACAGCCTCCGCCTCTCCGAC CTCAACCTCAACGTCGACCTCTCCCTGACGGCGAAGTTCGACGTCAGGGTCACGGCCAGTAACCCGAACGACAAGATTGGAATATACTACGAGAGCGGCG GCGTCATAAGCGTGTGGTACTCCGGCACCGACTTGTGCCGGGGACGGATTCCGAAGTTCTACCAGGGTCACCGGAATGTGACGAGGCTTCGGGTTGGGTT GGCCGGGAGGAACCGGTACGGTAACGCTTTGATGTCGGCCATACAGCAGCAGCAGACGACGGGGAGGATTCCGTTGGTGTTGAAAATACACGCTCCGGTG GCGGTGAAACTCGGTGCGTTGAAGATGAGGAAGGTTAAGGTTTTGGGTAATTGTGATTTGGTTGTGGATCGATTGAGTTTGAATAATCGGATTAATATTA AGGCTAGTGATTGTAAGTTTAAGTTGAAGCTTTGA
AA sequence Show only first row Show all	>Lus10031888 pacid=23180569 polypeptide=Lus10031888 locus=Lus10031888.g ID=Lus10031888.BGIv1.0 annot-version=v1.0 MATHEATYHRIHPIPPPPPSAVESPPSGDPPPSNHKPPSAPPPPMKPRKPNTRCMCKCVCWTLVILLILAVAVAASAATIYLVFKPKVPKYSVDSLRLSD LNLNVDLSLTAKFDVRVTASNPNDKIGIYYESGGVISVWYSGTDLCRGRIPKFYQGHRNVTRLRVGLAGRNRYGNALMSAIQQQQTTGRIPLVLKIHAPV AVKLGALKMRKVKVLGNCDLVVDRLSLNNRINIKASDCKFKLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	0	1
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	1.0	0.9798
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	2.2	0.9637
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042612 [exp]	3.0	0.9685
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	3.2	0.9709
					Lus10021373 [exp]	3.5	0.9645
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	4.0	0.9417
					Lus10009436 [exp]	4.2	0.9396
					Lus10003161 [exp]	4.5	0.9530
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	5.5	0.9627
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	6.5	0.9332

Compare expression of checked genes

Lus10031888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.