Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24780 119 / 1e-32 Pectin lyase-like superfamily protein (.1.2) AT3G27400 116 / 1e-31 Pectin lyase-like superfamily protein (.1) AT1G67750 113 / 1e-30 Pectate lyase family protein (.1) AT4G13210 112 / 3e-30 Pectin lyase-like superfamily protein (.1.2) AT5G63180 111 / 7e-30 Pectin lyase-like superfamily protein (.1) AT3G07010 111 / 7e-30 Pectin lyase-like superfamily protein (.1) AT4G13710 111 / 1e-29 Pectin lyase-like superfamily protein (.1.2) AT5G48900 110 / 2e-29 Pectin lyase-like superfamily protein (.1) AT3G24670 108 / 8e-29 Pectin lyase-like superfamily protein (.1) AT1G04680 103 / 5e-27 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011400 [exp] 133 / 4e-38 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 132 / 2e-37 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10013668 [exp] 115 / 3e-32 AT5G63180 424 / 2e-149 Pectin lyase-like superfamily protein (.1) Lus10013667 [exp] 114 / 4e-32 AT5G63180 469 / 4e-167 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 116 / 1e-31 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 115 / 5e-31 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 112 / 4e-30 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 112 / 4e-30 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042509 [exp] 107 / 9e-30 AT4G13710 367 / 3e-127 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339500 [exp] 120 / 3e-33 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 120 / 3e-33 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 117 / 7e-32 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 116 / 1e-31 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 115 / 3e-31 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G148800 [exp] 105 / 2e-27 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.006G196400 [exp] 97 / 5e-27 AT4G24780 184 / 3e-58 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 103 / 1e-26 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 103 / 1e-26 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 102 / 2e-26 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10031889 pacid=23180564 polypeptide=Lus10031889 locus=Lus10031889.g ID=Lus10031889.BGIv1.0 annot-version=v1.0 ATGTCAAGGTGTCGGCATGGGTACTTCCACGTGGTGAACAATGACTACACTCATTGGCTAATGTATGCAATTGGTGGGAGTGCTTCTCCAACCATCAATA GCCAAGGGAATAGGTTCCTGGCACCAAATGATAGATTCAACAAAGAGGTGACGAAACGGGAGGACGCGGGGGAGAGCGAGTGGAAGAAGTGTCGGAAGGG GACCTATTGCTCAACGGTGCATTCTTCACAAGGTCCGGAGCCGGAGCATCATCGAGCTATGCTCTTGTGGGACAAGAGCTTTTGGGGGAAGATGGGATTT GTGCATTGTGGTAAAGATTTGATCTTTGTAAAACTTATAATTCAAGCATATAAATGGAGACAACGGTCTATACCGGTTTTCGACGATAAGTCGTATCGTA CTAACGAACCTTCGAATCATGCCCCGTAG
AA sequence Show only first row Show all	>Lus10031889 pacid=23180564 polypeptide=Lus10031889 locus=Lus10031889.g ID=Lus10031889.BGIv1.0 annot-version=v1.0 MSRCRHGYFHVVNNDYTHWLMYAIGGSASPTINSQGNRFLAPNDRFNKEVTKREDAGESEWKKCRKGTYCSTVHSSQGPEPEHHRAMLLWDKSFWGKMGF VHCGKDLIFVKLIIQAYKWRQRSIPVFDDKSYRTNEPSNHAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24780			Pectin lyase-like superfamily ...		Lus10031889 [exp]	0	1

Compare expression of checked genes

Lus10031889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.