Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24760 531 / 0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G77120 360 / 2e-123 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 342 / 5e-116 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G64710 317 / 5e-106 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 316 / 1e-105 GroES-like zinc-binding dehydrogenase family protein (.1) AT4G22110 291 / 3e-96 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 288 / 6e-95 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 285 / 2e-93 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 283 / 6e-93 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 114 / 3e-28 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031319 [exp] 422 / 1e-147 AT5G24760 353 / 2e-135 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10029759 [exp] 357 / 4e-122 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 355 / 4e-121 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 353 / 2e-120 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 353 / 2e-120 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 335 / 2e-113 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 328 / 1e-108 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 312 / 1e-103 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10023572 [exp] 283 / 5e-92 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067000 [exp] 564 / 0 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.007G108601 [exp] 380 / 4e-131 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 380 / 4e-131 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 378 / 2e-130 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 378 / 3e-130 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 377 / 7e-130 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 376 / 1e-129 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 375 / 4e-129 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 365 / 5e-125 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 352 / 4e-120 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10031890 pacid=23180748 polypeptide=Lus10031890 locus=Lus10031890.g ID=Lus10031890.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCGCCTTCTTCCTCCGATCACTCTGCGCCTCCGGGGGTCATCAAATGTAGAGCTGCGGTGGCGTGGGGATCTGGAGAGGAGTTGGTGATAG AAGAAGTGGAGCTCAGTCCGCCGCAACCGGGCGAGATCCGGATCAAAGTCTTCTCCTCTTCTCTCTGCCGCTCCGACATCTCCGCTTGGGAGTCTCAGGC AATATTTCCGCGGATATTCGGCCACGAAGCATCTGGGATTGTTGAGAGCATTGGCGATGGGGTGACTGAGTTCAACAAAGGGGACCATGTGCTTACAGTG TTCACTGGAGAATGCATGACCTGTAAGCAGTGCACATCAGGCAAGAGCAATGTGTGCCAAGTACTGGGGCTAGAGAGGAGAGGCTTGATGCACAGCGATC AGAAGACTCGATTTTCGATCAAAGGGAATCCCGTCTTCCATTATTGTGCTGTCTCGAGTTTCAGCGAGTATACAGTAGTCCACTCTGGGTGTGCTGTTAA AGTTAGCCCAACTGCACCTCTGGAGAAGATATGCCTTCTTAGCTGTGGAGTTGCTGCAGGTTTGGGTGCAGCTTGGAACGTTGCTGGTGTATCTGAAGGA TCAACCGTGGCTATTTTTGGTCTTGGAACTGTTGGTCTCTCTGTTGCACAAGGTGCTAGACTGAAAGGTGCATCTCGAATAATTGGAGTCGACACGAACC CTGAAAAATGTGACAAAGCAAAGGCTTTTGGAGTTACAGACTTCATCAACCCAAATGATAGCAGTGAGCCTGTTCAACAGGTGATTAAGCGAATCACCAA CGGAGGAGCAGATTACTCGTTCGAATGTATAGGCGACACCGGGATGATAACCACTGCCTTACAGTCATGTTGCGATGGATGGGGAATGACAGTCACCCTC GGCGTACCAAAAGTGAAGCCTGAGGTATCTGCTCACTACGGCCTGTTGCTTACCGGAAGAACACTGAAAGGAACTCTATTTGGTGGGTGGAGACCAAAGT CAGATCTCCCTTCATTAGTCGACATGTACATGAACAAGGCAAGTACATACATCACCATCGTCGCGAATCCTTGCATCCGATTCAATACAGCTTTCCGATA A
AA sequence Show only first row Show all	>Lus10031890 pacid=23180748 polypeptide=Lus10031890 locus=Lus10031890.g ID=Lus10031890.BGIv1.0 annot-version=v1.0 MSPSPSSSDHSAPPGVIKCRAAVAWGSGEELVIEEVELSPPQPGEIRIKVFSSSLCRSDISAWESQAIFPRIFGHEASGIVESIGDGVTEFNKGDHVLTV FTGECMTCKQCTSGKSNVCQVLGLERRGLMHSDQKTRFSIKGNPVFHYCAVSSFSEYTVVHSGCAVKVSPTAPLEKICLLSCGVAAGLGAAWNVAGVSEG STVAIFGLGTVGLSVAQGARLKGASRIIGVDTNPEKCDKAKAFGVTDFINPNDSSEPVQQVIKRITNGGADYSFECIGDTGMITTALQSCCDGWGMTVTL GVPKVKPEVSAHYGLLLTGRTLKGTLFGGWRPKSDLPSLVDMYMNKASTYITIVANPCIRFNTAFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031890 [exp]	0	1
AT5G50350			unknown protein		Lus10033401 [exp]	9.5	0.8619
AT3G16210			F-box family protein (.1)		Lus10015408 [exp]	10.0	0.8771
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	21.2	0.8606
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	23.7	0.8688
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	24.1	0.8762
AT3G06145			unknown protein		Lus10004420 [exp]	26.6	0.8111
AT5G59350			unknown protein		Lus10016568 [exp]	28.6	0.8729
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	38.0	0.8532
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	39.0	0.7981
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10028068 [exp]	45.8	0.8262

Compare expression of checked genes

Lus10031890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.