Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17700 816 / 0 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT3G17690 734 / 0 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT4G30560 358 / 9e-113 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 355 / 3e-111 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 352 / 9e-110 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT2G28260 349 / 2e-109 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT1G19780 348 / 1e-108 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 343 / 7e-107 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G30360 340 / 8e-106 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT2G24610 339 / 3e-105 ATCNGC14 cyclic nucleotide-gated channel 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031320 [exp] 1451 / 0 AT3G17700 888 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10021461 [exp] 367 / 3e-116 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10022155 [exp] 362 / 6e-114 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10036260 [exp] 363 / 1e-112 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10037394 [exp] 355 / 9e-112 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10024073 [exp] 351 / 1e-109 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 350 / 9e-109 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10039415 [exp] 337 / 2e-104 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10015510 [exp] 337 / 3e-104 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034000 [exp] 976 / 0 AT3G17700 905 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G038700 [exp] 919 / 0 AT3G17700 818 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.015G033900 [exp] 912 / 0 AT3G17700 838 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.018G097600 [exp] 359 / 2e-113 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.003G183000 [exp] 350 / 3e-109 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 348 / 2e-108 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 346 / 7e-108 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.009G010700 [exp] 344 / 2e-107 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.012G002200 [exp] 342 / 2e-106 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.017G067000 [exp] 341 / 2e-106 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031891 pacid=23180808 polypeptide=Lus10031891 locus=Lus10031891.g ID=Lus10031891.BGIv1.0 annot-version=v1.0 ATGGTTAATTATGACAAAGACGAGATACCCATGCTATCAGCTGCTCATGATGCGCAGCTGTCGGACGAGCCTGTGCATGATGCTATATACAGGGAAGTCC TTGTGAGGGCCCATAGTGCATCGGTAGCTGTTTCTATGGATCCATACGAGAGCGGGAACCGTCTTGCAGGCTATACGGGTCCACTGCGCAGTGAAAGAAA AACACCTTTGAGTCAACTGAGTGGACCGCTGTATGTCAGTCGCCAAACGGAAGATATTTCTCATCAGAAGAGTGCTTTATCGGTGAAGAAAAGTCTAGAT CGAAATGTCGAGATATTTCCTTCCTTGAAAACCACGGACCAGGATGATTGGAGGGGTGATAGTACACATGGTGGTGCTAAGAATGAACATCTGTTGAGGT CTGGTCAATTGGGGATGTGTAGTGACCCTTACTGTACAACTTGTCCCATGTTTTACAATGCTAACATAGTAAAGCAGAAACCTTCAAGAACTTCCTTTCT TTTTGACCCTCAGTTCCATAATAATCTGTACGGTGATGCTAAAGGGTGTGCAAAGAGGTTTATGTCGTTTGTAAACCCATATATTCCTGGGGTTATGAAC CCTCATACCAAAGTTGTTCAGCAGTTTAACAAGTTTTTTGTGATCTCATGTATTGTGGCAATATTCGTTGACCCGCTATTTTTCTTCTTGCTGTCTGTGG ACCAGACTAACAAGTGCATACTGATTAATTGGCCCATGACTACAACTATTGTGGTCTTGAGGAGTGTGACTGATTTTGTATACTTATTGAACATACTCCT CCAGTTCAGGTTGGCTTATATAGCTCCTGAGTCTAGAGTTGTTGGTGCTGGAGAGTTAGTTGACCATCCCAAGAAGATTGCAATGAACTACATCCGTGGA AGCTTTTTCGTCGATTTGTTCATCGTACTGCCTCTTCCTCAAATCATCATATTGGTGATACTACCAGATATATTGGGATCGTCAGGAGCGAATTACGCCA AAAACCTTCTACGGGCAGCAGTTCTTGTCCAATATATTCCTAGATTGTATAGGTTCTTGCCGTTTCTTGTTGGGCAGTCTTCAAGTGGCTTCATCTTTGA AACGGCCTGGGCAAACTTCTTTATAAACCTTCTCAGTTTCATGTTGGCGGGGCACGGTATTGGATCATCTTGGTATCTCTTGGGATTACAGAGGGTTAAT CAATGCCTACGTGATGCTTGCCGTCATTCTGGGATAGCCAACTGCACGGATTTCATTGACTGTGGTCATGGCGATGACTTCAGTGGGTTTAGTTCCAATC CACAATGGAGCAACTGGACAGGCAATGTCAATGCCACTGCTTGTTTTAATACAAAAGATGGTAGCTTTTCTTACGGAATCTACGTCCAAGCTGTCATGCT CACCACAAAACGCAGTTTCGTCACCAGATACATATATTCATTATTCTGGGGGTTCCAGCAAATCAGTACTCTTGCGGGAAACCAAGTACCAAGCTATTTC GAGGCTGAAGTCCTTTTCACAATGCTTATTATCGGACTTGGTCTCTTGCTCTTTGCCTTTCTCATTGGCAATATGCAAAACTTTCTCCAGGCCCTTGGAA GGAGGAGGTTAGAAATGTCTTTAAGGCGGCGTGATGTGGATCAGTGGATGAGGCATCGACGTTTTTCGCCAGAACTAAGGAGGAAAGTGTTGGAAGCTGA ACGGTACAACTGGGCAGCTACCAGAGGAGTCAATGAAGAATTACTCTTGGGAAATCTACCAGAAGATCTCCAGAGAGAAATTAGAAGACACCTCTTCAAA TTTGTCTGGATATTCGCACTGATGGACGACCATGTGCTGGACGCGATTTGCGAGAGGCTGAAGCAGATGATATACATCAAAGGCAGCGAGATCTTCTACC ACCATGGTGTCGTTGACAAGATGGTCTTCATCGTTCGTGGGACGTTGGAAAGCGTAGGTGAAGATGGTACTGTAGTCACCTTATCAGAAGGCCAAGTCTG CGGGGAAGAGCTCCTGACTTGGTGCCTCGAGCATTCTTCAGTAAGCAGAGACGGGAAGAAGATCAAGTTTCCTGGACATAGATTGATCAGCAGCAGAATG GTTAGATGTCTAACCAACGTAGAGGCGTTCTCGCTTCGAGCTGTCGATCTCGAAGAAGTCACCAGCATCTTCACTAGGAACTTGAGGAACCCACGAGTTC AAGGAGCCATAAGGTATGCATCACCTTACTGGAGAAGCATTGCAGCAAGAAGGATCCAAGTAGCATGGAGGTATCGGCAGAAGCGGTTCAAACGAAACGA GACCCGAAAACCGAGCCCGGTTTCGTACTATCCTCGTCCTCAGCTCTTCCATCCTCTTGCTTGA
AA sequence Show only first row Show all	>Lus10031891 pacid=23180808 polypeptide=Lus10031891 locus=Lus10031891.g ID=Lus10031891.BGIv1.0 annot-version=v1.0 MVNYDKDEIPMLSAAHDAQLSDEPVHDAIYREVLVRAHSASVAVSMDPYESGNRLAGYTGPLRSERKTPLSQLSGPLYVSRQTEDISHQKSALSVKKSLD RNVEIFPSLKTTDQDDWRGDSTHGGAKNEHLLRSGQLGMCSDPYCTTCPMFYNANIVKQKPSRTSFLFDPQFHNNLYGDAKGCAKRFMSFVNPYIPGVMN PHTKVVQQFNKFFVISCIVAIFVDPLFFFLLSVDQTNKCILINWPMTTTIVVLRSVTDFVYLLNILLQFRLAYIAPESRVVGAGELVDHPKKIAMNYIRG SFFVDLFIVLPLPQIIILVILPDILGSSGANYAKNLLRAAVLVQYIPRLYRFLPFLVGQSSSGFIFETAWANFFINLLSFMLAGHGIGSSWYLLGLQRVN QCLRDACRHSGIANCTDFIDCGHGDDFSGFSSNPQWSNWTGNVNATACFNTKDGSFSYGIYVQAVMLTTKRSFVTRYIYSLFWGFQQISTLAGNQVPSYF EAEVLFTMLIIGLGLLLFAFLIGNMQNFLQALGRRRLEMSLRRRDVDQWMRHRRFSPELRRKVLEAERYNWAATRGVNEELLLGNLPEDLQREIRRHLFK FVWIFALMDDHVLDAICERLKQMIYIKGSEIFYHHGVVDKMVFIVRGTLESVGEDGTVVTLSEGQVCGEELLTWCLEHSSVSRDGKKIKFPGHRLISSRM VRCLTNVEAFSLRAVDLEEVTSIFTRNLRNPRVQGAIRYASPYWRSIAARRIQVAWRYRQKRFKRNETRKPSPVSYYPRPQLFHPLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	0	1
AT3G61800			unknown protein		Lus10004000 [exp]	1.0	0.9388
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	1.4	0.9157
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	2.4	0.9149
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	3.5	0.9114
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	4.5	0.9004
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	5.3	0.8760
					Lus10040920 [exp]	6.5	0.8964
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	7.4	0.8913
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	9.8	0.8467
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10012322 [exp]	10.2	0.8443

Compare expression of checked genes

Lus10031891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.