Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73360 603 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 575 / 0 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G52170 485 / 3e-164 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 477 / 2e-160 HD PDF2 protodermal factor 2 (.1) AT1G05230 470 / 9e-158 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 468 / 2e-156 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G79840 459 / 4e-153 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G17710 434 / 7e-144 HD HDG4 homeodomain GLABROUS 4 (.1) AT3G61150 426 / 2e-139 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 420 / 2e-137 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031321 [exp] 926 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10039667 [exp] 466 / 8e-155 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10018359 [exp] 451 / 2e-153 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 462 / 3e-153 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10007650 [exp] 452 / 9e-151 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10006765 [exp] 451 / 2e-150 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 448 / 2e-149 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10005758 [exp] 419 / 8e-140 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 395 / 6e-128 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034100 [exp] 860 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 759 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.002G230200 [exp] 550 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G074800 [exp] 504 / 3e-171 AT1G73360 640 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.003G096000 [exp] 492 / 4e-165 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) Potri.017G144601 [exp] 473 / 2e-160 AT1G73360 494 / 2e-167 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G152000 [exp] 473 / 1e-158 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.001G137800 [exp] 470 / 1e-156 AT5G46880 842 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) Potri.003G052400 [exp] 466 / 7e-156 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.002G154700 [exp] 468 / 1e-155 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10031892 pacid=23180614 polypeptide=Lus10031892 locus=Lus10031892.g ID=Lus10031892.BGIv1.0 annot-version=v1.0 ATGGAGTACAGTAATGCCGGCGGCGGCGCTCTCGGCGGCGGAGGTGGAGGAGCGGGAAGTGGGGACCATGATTCGTCGTCCGACGTGCAGATGAAGAAGA AGAAGAAGTACCATCGGCACACTGTTGCCCAGATTCAGAAGCTTGAAGCGATGTTCAAAGAATGTCCGCACCCAGATGAGAAGCAGCGGCTGTATTTGAG CAGGGAGCTGGGTTTGTCTCCTAGGCAGATCAAGTTCTGGTTCCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCAGACAACTGTGCACTG AGAGCTGAGAATGATAAGATAAGGTGTGAGAACATAGCCATTAGGGAGGCACTAAGGAATGTGATTTGCCCCTCTTGTGGAGGGCCTCCGGTTAATGAGG ATTCGTATTTCGACGAGCACAAGCTGCGAATCGAGAATGCTCAGTTGAAAGAAGAGTCTTTGGATGGTGGAGGGAGGGATGTTCTTAACCTGGAAACCTA TCAGAAGCTTTTTCCAAAGCCTAATGATCATTTGAAAAATCCTAATGTTCGAATCGAGGCGTCTAGGGATTCTGGAGTTGTGATCATGAATGGTTTAGCC TTGGTTGACATGTTTATGGATGCAAACAAGTGGATGGAGTTGTTTCCGACGATTGTGTCAATGGCGAAGACCATCGAAGTACTTACACCGGGAATGATTA GTGCTTACAATGGCTGTTTACAGCTGATGTATGAAGAGTTGCAAGTGCTTTCCCCATTAGTGCCAACTCGAGAATTCTACATCCTTCGGTACTGTCAGCA AATTGAACAAGGGGTGTGGGCAGTTGTCAATGTTTCTTATGATATTCCTCAATTTGCTTCTCAGTTTCGATCTTATCGGCTCCCTTCCGGTTGCTTGATC GAGGATATGCCTAATGGTTACTCAAAGGTTACTTGGGTGGAGCATGTTGAGATAGAAGATAGGGCTCCAATTCACCGGCTTTATCGAGATCTCATCTACA GTGGAATGGCATTTGGTGCCGAACGCTGGCTTTCTACACTACAAAGAATGTGTGAACGGTTTGCGTGTCTGATGGTTTCCAATACTTCGACTCGAGATCT TGGCGGAGTGATTCCATCGCCCGATGGAAAGCGGAGTATGATGAAACTTGCACAGAGAATGGTGAACAGTTTTTGCTCTAGCATCAGCACATCCAACAGC CACCAATGGACGACATTATCTGGATTGGATGAAGTTGGTGTTCGAGTCACTTTACGTAAGAGTACCAATCCTGGCCAGCCTAACGGCGTGGTTCTCAGCG CTGCCACCACTTTCTGGCTTCCGGTTTCTCCCCAGAACGTGTTCAATTTCTTCAAGGATGAAAAAACTCGGTCGCAGTGGGATGTTCTTTCAAGTGGGAA TGGAGTTCAGGAAGTCGCCCATATCGCAAACGGATCACACCCTGGGAACTGCATATCTGTTCTTCGCGCATTCAACACGAGTCAGAACAACATGTTGATA CTCCAGGAGAGCTGCATAGACTCATCAGGTTCGCTTGTAGTCTACTGTCCAGTCGAGCTCCAAGCGATAAACATAGCAATGAGCGGCGAGGACCCATCTT GCATCCCATTACTACCATCAGGGTTTACTATCTGCTCCGATGGCAGCCTCGGCCAACCCTCTTCTTCAGCAGATGGAGCCTCAACAAGCGGAAAGTCAAC AGGTTCACTAATCACAGTAGCATTCCAAATACTGGTCAGCAGCTTGCCATCCGCCAAGCTGAACATGGAATCAGTCACAACTGTTAACAACCTGATTGGC ACAACAGTTCAGCAAATCAAGGCAGCCTTGAATTGCCCTCAAAGCTCCTGA
AA sequence Show only first row Show all	>Lus10031892 pacid=23180614 polypeptide=Lus10031892 locus=Lus10031892.g ID=Lus10031892.BGIv1.0 annot-version=v1.0 MEYSNAGGGALGGGGGGAGSGDHDSSSDVQMKKKKKYHRHTVAQIQKLEAMFKECPHPDEKQRLYLSRELGLSPRQIKFWFQNRRTQMKAQHERADNCAL RAENDKIRCENIAIREALRNVICPSCGGPPVNEDSYFDEHKLRIENAQLKEESLDGGGRDVLNLETYQKLFPKPNDHLKNPNVRIEASRDSGVVIMNGLA LVDMFMDANKWMELFPTIVSMAKTIEVLTPGMISAYNGCLQLMYEELQVLSPLVPTREFYILRYCQQIEQGVWAVVNVSYDIPQFASQFRSYRLPSGCLI EDMPNGYSKVTWVEHVEIEDRAPIHRLYRDLIYSGMAFGAERWLSTLQRMCERFACLMVSNTSTRDLGGVIPSPDGKRSMMKLAQRMVNSFCSSISTSNS HQWTTLSGLDEVGVRVTLRKSTNPGQPNGVVLSAATTFWLPVSPQNVFNFFKDEKTRSQWDVLSSGNGVQEVAHIANGSHPGNCISVLRAFNTSQNNMLI LQESCIDSSGSLVVYCPVELQAINIAMSGEDPSCIPLLPSGFTICSDGSLGQPSSSADGASTSGKSTGSLITVAFQILVSSLPSAKLNMESVTTVNNLIG TTVQQIKAALNCPQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	0	1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	2.2	0.9512
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	3.2	0.9363
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	3.2	0.9495
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	3.5	0.9464
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	4.0	0.9392
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	4.5	0.9147
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Lus10015699 [exp]	7.3	0.8796
AT3G48200			unknown protein		Lus10035212 [exp]	7.3	0.9254
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	7.5	0.9239
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	9.2	0.8657

Compare expression of checked genes

Lus10031892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.