Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73320 356 / 4e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G08125 135 / 1e-37 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT5G44170 75 / 6e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G26810 63 / 2e-11 Putative methyltransferase family protein (.1.2.3) AT5G49560 62 / 4e-11 Putative methyltransferase family protein (.1) AT5G27400 54 / 5e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G35987 53 / 5e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 54 / 7e-08 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G50850 51 / 3e-07 Putative methyltransferase family protein (.1) AT2G26200 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021425 [exp] 123 / 4e-33 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10018640 [exp] 65 / 4e-12 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015166 [exp] 65 / 7e-12 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016141 [exp] 63 / 3e-11 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031516 [exp] 61 / 1e-10 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10039876 [exp] 56 / 2e-09 AT5G44170 244 / 5e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028415 [exp] 55 / 1e-08 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10041869 [exp] 52 / 9e-08 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10024993 [exp] 50 / 1e-06 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G153900 [exp] 395 / 4e-140 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G006800 [exp] 120 / 3e-32 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G017000 [exp] 84 / 6e-19 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G148200 [exp] 79 / 2e-17 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G068400 [exp] 64 / 7e-12 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.007G025600 [exp] 62 / 5e-11 AT5G49560 289 / 2e-98 Putative methyltransferase family protein (.1) Potri.005G109000 [exp] 53 / 3e-08 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.005G039000 [exp] 51 / 4e-07 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G225600 [exp] 49 / 2e-06 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G031700 [exp] 41 / 0.0008 AT2G43320 527 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10031894 pacid=23180618 polypeptide=Lus10031894 locus=Lus10031894.g ID=Lus10031894.BGIv1.0 annot-version=v1.0 ATGGCGAATCCGGCTACCGAAAGCTTAGAACAAGAAGAAGAGGAGGTGATGAATATGGGGAAGCTCGGGCTGTATGAAGCGAATGTGAGGTTGCTGAGTA GCGAAGATTCGGAATCTGCCGCTGAGGAAATCATGCTGCTATGGGGAATCCAACAGCCCACCTTTTCGAAACCGAATGCTTATGTCTCCCAGTCCTCTCT CCAGCTCCGCCTCGACGCTTGTGGTCACTCCCTCAACATTCTTCAGTCTCCTTCCTCCTTGGGTTCACCAGGAGTGACAGGATCAGTGATGTGGGACAGT GGCATTGTACTAGGCAAGTTCTTGGAACACGCAGCTGATTCGAAGATGCTTGTTCTTCAAGGCAAGAAGGTTATCGAGCTTGGTTCGGGCTGTGGATTGG TAGGATGCATAGCCTCTCTTCTGGGTGCAGAAGTGATACTCACTGATCTCCCCGACCGAATGCGGCTCCTGAGAAAGAACGTTGAGACCAATGTGGGCCA CGAGCATCTACGTGGCTCTGCAGTCGTGGAGGAGCTCACTTGGGGAGACGACCCTGACCGGTCCATGATCGAACCCTTGCCCGATTACGTTGTGGGGTCC GACGTGGTGTACAGCGAAGGAGCCGTGGGGGATCTGCTGGACACGCTCCTCAAACTCTGCGGACCAAAGACAACAGTGTTCATAGCTGGGGAGCTACGAA ATGATGCAGTGCTTGAGTACTTCTTGGAGGAAGCCATGAAGGAGTTTATGGTAGGGAGAGTTGAGCAGTCCGAATGGCATCCGGATTACAACAGCCGCCG GGTTGTGCTGTATATCATGGTCAGGAAGTAG
AA sequence Show only first row Show all	>Lus10031894 pacid=23180618 polypeptide=Lus10031894 locus=Lus10031894.g ID=Lus10031894.BGIv1.0 annot-version=v1.0 MANPATESLEQEEEEVMNMGKLGLYEANVRLLSSEDSESAAEEIMLLWGIQQPTFSKPNAYVSQSSLQLRLDACGHSLNILQSPSSLGSPGVTGSVMWDS GIVLGKFLEHAADSKMLVLQGKKVIELGSGCGLVGCIASLLGAEVILTDLPDRMRLLRKNVETNVGHEHLRGSAVVEELTWGDDPDRSMIEPLPDYVVGS DVVYSEGAVGDLLDTLLKLCGPKTTVFIAGELRNDAVLEYFLEEAMKEFMVGRVEQSEWHPDYNSRRVVLYIMVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73320			S-adenosyl-L-methionine-depend...		Lus10031894 [exp]	0	1
AT4G17250			unknown protein		Lus10000731 [exp]	6.7	0.7410
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	8.7	0.7216
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10043190 [exp]	10.6	0.6733
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	12.2	0.6887
					Lus10007992 [exp]	12.7	0.7400
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	14.1	0.7365
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	16.6	0.7044
AT1G22140			unknown protein		Lus10028077 [exp]	22.5	0.6738
					Lus10003592 [exp]	24.2	0.6954
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	25.2	0.7201

Compare expression of checked genes

Lus10031894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.