Plant FIBer expression Database

Lus10031897 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73350 148 / 1e-44 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042294
[exp]
201 / 1e-65 AT1G73350 223 / 3e-74 unknown protein
Lus10026363
[exp]
172 / 3e-53 AT1G73350 193 / 2e-61 unknown protein
Lus10031324
[exp]
85 / 2e-21 ND 107 / 6e-31
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G066700
[exp]
164 / 7e-51 AT1G73350 192 / 7e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10031897 pacid=23180565 polypeptide=Lus10031897 locus=Lus10031897.g ID=Lus10031897.BGIv1.0 annot-version=v1.0
ATGCATTGTGAAAAGCTGAGGCAGCGTTGTGGTGGGTGTTGGCGGATAATGGCGGGAAGGGAAGTGCGAGAATACACCAACCTCACCGATCCCAAAGATA
GGAAGTTTGGGAAGGGGAAGGACAAAATCGACGATGAAGATATCACGTTCCAGCGCATGGTTGCTAAGATGCAAGAAGTTGCTGGAGAACGCGGTGGCTA
TCTTCATGGGCGAGGCGCCTTGGACAGTGATGACCTACTTTACCTTAAGGAGCAGATGGAAGCCGAAGAGGATGCTGAACGACTCCTTCGACGCACAGAG
AAAAGGGCGTTCGCTGCATTTAAAATATCCTTTTCAACTGCAACCTTGGCGGATACTTCACCAGCATCAGTCCCCTTACCACTTCGCGTAGAACCCAAAC
CGAAGAGCGGCATAAGACAGCAGGATCTGCTGAAAAAGGTGGTGGAAGTCAAACCCAAACGGCCCCGAGTTTTAAACCAGCCTGCTGCAAGAATCTCTAC
TTCCGTTCCAAGTAATCGTGGTTTGGAAACTTTGACGAATTTGAAGACTGAAAGTAAGCCGACTTCTGTTGCGGAAGAGCTTTCCGAGAAACCCTCTGCC
AAAAGCTTGCTTGGGTTAGCGTACGAAAGTTCCGACAGCGATGATGAATGA
AA sequence
>Lus10031897 pacid=23180565 polypeptide=Lus10031897 locus=Lus10031897.g ID=Lus10031897.BGIv1.0 annot-version=v1.0
MHCEKLRQRCGGCWRIMAGREVREYTNLTDPKDRKFGKGKDKIDDEDITFQRMVAKMQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTE
KRAFAAFKISFSTATLADTSPASVPLPLRVEPKPKSGIRQQDLLKKVVEVKPKRPRVLNQPAARISTSVPSNRGLETLTNLKTESKPTSVAEELSEKPSA
KSLLGLAYESSDSDDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73350 unknown protein Lus10031897
[exp]
0 1
AT1G63900 DAL1 DIAP1-like protein 1, E3 Ubiqu... Lus10027994
[exp]
2.0 0.9194
AT1G55280 Lipase/lipooxygenase, PLAT/LH2... Lus10039181
[exp]
2.0 0.9203
AT5G01260 Carbohydrate-binding-like fold... Lus10004826
[exp]
4.0 0.9088
AT5G01260 Carbohydrate-binding-like fold... Lus10002495
[exp]
4.4 0.9219
AT5G13240 transcription regulators (.1) Lus10007961
[exp]
5.0 0.9160
AT3G05675 BTB/POZ domain-containing prot... Lus10013580
[exp]
5.3 0.9096
AT3G47160 RING/U-box superfamily protein... Lus10001209
[exp]
6.2 0.9195
AT5G52880 F-box family protein (.1) Lus10027549
[exp]
11.2 0.8940
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10013219
[exp]
11.7 0.8803
AT1G73350 unknown protein Lus10042294
[exp]
11.7 0.8930

Lus10031897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.