Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48420 556 / 0 DCD, ATACD1, ACD1, D-CDES A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) AT3G26115 59 / 3e-09 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031325 [exp] 647 / 0 AT1G48420 497 / 2e-176 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) Lus10036952 [exp] 56 / 4e-08 AT3G26115 452 / 7e-158 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038900 [exp] 606 / 0 AT1G48420 588 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10031898 pacid=23180784 polypeptide=Lus10031898 locus=Lus10031898.g ID=Lus10031898.BGIv1.0 annot-version=v1.0 ATGCCGAGCCATCGCTGTCTCATCGCCGGCATCCCTCTCATTTCCCCACCTCCGATCATCGCCGTCCAACCATTTCTCTCAACAGCTCACTTCCTCCACC GTCGTTCATCATCGTCCACCGTTTCATCATCTCACTCTCAAACAATGGAATCATCAGTATCATCATCATCGGCAGCTCGGAACTCGTTGGATTTTCTCTC GAGGAAACCCTACGTTCCACCGTCGTGGGCGTCGCACCTCAGCCCAATTCCATCTCACGTCTTCTCCCTCGCGCACTCACCTACTCCCATCCACCGGTGG AACCTCCCCAACTTGCCTAAGGGAACCGAGCTCTGGCTGAAGCGCGATGATCTCTCCGGGATGCAGTTGAGCGGCAACAAAGTGAGGAAGCTGGAGTTCT TGATGTCCGACGCGGTGGCTCAGGGCGCCGATTGCGTGGTTACCGTGGGTGGGATTCAGAGTAACCACTGCCGTGCTACTGCTGTTGCGGCGAGGTACCT CGGCCTGGATTGTCATCTCATACTTCGCACTTCCAAGGTCGTTGTGGATCAGGATCCTGGATTGACAGGGAACTTGCTTGTGGAGAGATTAGTTGGAGCT CATGTTCATCTTATTTCGAAAGAGGAGTATGCACAGATTGGGAGTGTGGCACTTGCTGAGTTGTTGAAAGAAAAGCTGATAAAGGAAGGAAGAAAGCCAT ATGTTATCCCCGTCGGCGGATCGAACTCACTGGGAACTTGGGGTTATATCGAAGCGATCAGGGAAATCGAGCAGCAGGTTGAGGCCGGAGATGGCAGGAT CAATTTCGACGATATTGTCGTGGCATGTGGCAGCGGAGGCACGATAGCTGGTCTCGCTTTGGGATCACATCTGGCAGGATTGAAAGCAAAAGTCCATGCA TTCTCTGTTTGCGACGACCCCGATTACTTCTACGCCTTTGTTCAAGACCTACTTGATGGACTGAAAGCCGGTGTAAATACTCGCAACATTGTAAACATTC AAAATGCGAAAGGTCTTGGCTACGCTATGAACACCTCCGAAGAGATCCAATTTGTTAAGGAAGTTGCTGCAGCCACCGGTATCGTCCTCGACCCAGTCTA CAGCGGTAAAGCTACCTACGGGATGCTGAAAGACATGAAACACAATCCACAGAACTGGGAAGGCAGAAAAATCCTATTCATACACACCGGTGGCCTCCTG GGGCTCTACGATAAAGCGGACCAGCTCGCACCATTGATGGCCGGAAGCTGGAGCCGGATGGACGTCCACGAGTCCGTAACAAGGCAGGAAGGCATTGGCA AGATGTTTTGA
AA sequence Show only first row Show all	>Lus10031898 pacid=23180784 polypeptide=Lus10031898 locus=Lus10031898.g ID=Lus10031898.BGIv1.0 annot-version=v1.0 MPSHRCLIAGIPLISPPPIIAVQPFLSTAHFLHRRSSSSTVSSSHSQTMESSVSSSSAARNSLDFLSRKPYVPPSWASHLSPIPSHVFSLAHSPTPIHRW NLPNLPKGTELWLKRDDLSGMQLSGNKVRKLEFLMSDAVAQGADCVVTVGGIQSNHCRATAVAARYLGLDCHLILRTSKVVVDQDPGLTGNLLVERLVGA HVHLISKEEYAQIGSVALAELLKEKLIKEGRKPYVIPVGGSNSLGTWGYIEAIREIEQQVEAGDGRINFDDIVVACGSGGTIAGLALGSHLAGLKAKVHA FSVCDDPDYFYAFVQDLLDGLKAGVNTRNIVNIQNAKGLGYAMNTSEEIQFVKEVAAATGIVLDPVYSGKATYGMLKDMKHNPQNWEGRKILFIHTGGLL GLYDKADQLAPLMAGSWSRMDVHESVTRQEGIGKMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	0	1
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031325 [exp]	2.0	0.8141
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	7.9	0.7591
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	8.1	0.8221
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	10.0	0.7961
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	12.2	0.8086
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	19.7	0.7809
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	20.0	0.8070
AT3G15000			cobalt ion binding (.1)		Lus10014696 [exp]	23.0	0.7746
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	26.2	0.7975
AT1G03910			unknown protein		Lus10027731 [exp]	30.5	0.7258

Compare expression of checked genes

Lus10031898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.