Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17740 1068 / 0 unknown protein AT3G17712 617 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033300 [exp] 1399 / 0 AT3G17740 1133 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08424 [flax] [poplar] NRDE-2 NRDE-2, necessary for RNA interference
Representative CDS sequence Show only first row Show all	>Lus10031899 pacid=23180690 polypeptide=Lus10031899 locus=Lus10031899.g ID=Lus10031899.BGIv1.0 annot-version=v1.0 ATGGAGAAAGGAGAAGAAGCAGCGGCAAATCCTTCGTCTCTCTTCCCGCTCTTCGCCGCCGCCTCCTCCTCAGTCACCACACCCCTCCGCCACGGTGCTA CAACCTCCACCGCCCCCGCCTCCGATACCTGGCTTCAGAATGTGAGCTTCACCGCCGACGTCCGTGTAATAAACGAAGCTGTAACTTCCTCCCTCCGGCA GGATGCGGCGCCGGACGACGGGTGTGATTCCGATTCCGACGAGGGAAGGCCTGGTGGAACGAACCCAACAGTACCCAGTTACGAGCTGGTTGAAGAAGAA GGTTACCAGCAAGAAATGAAAGATGGGAAAGATGGAGCTCGGATTTACTCCACCGACTCCGATTATCGGTCTGACGGCGATAAGGGGAGAAAGCATAGGA GTAAGAAGAAGAAAAAGGCGGGAGGAGGGAGTAAGAGGAAGAGGAGCGAAGATAGATACGGCGGTTTTGCTTCAAGGAAGTCTAATGTTAGGAATTGGGC TGATTCGGATGCTAAGCCGGCAAAAGATTATTACTTTGACGGCCATGGTGATCGGGATAATTTAGCTTATGGCTCACTCTACAGGATGGATGTTCCACGC TATAAACCTTATAGTACAGCAAGCCCTTATGGAGTAAACATGAAAGGGATGTGCCGGTTTAACCAGAAGGGGAAAACGCTTGATGCCGATGCCGATGTTG ATGTACTGGATACTAAGCTGAAATCCGATGGACGTTACTGGTCTCCCAAGTATGCATCTCTAGTCCGCCACAAGAACTTGAAGCGTCTTCGTTTTCTTGC TCCTACTGAGCCAGAAGTTACAGAGTCAGAAGATTTCATTCCGCTGCTAGATAATAGTCAGTTTTCTAGGCAAGATGAAGTTGATCAGGCTGCATCCTCT TCGAAGGCATCCATAGTTGAAGAGTCTTGGGATGACGAAATGCTGCGGAAAACGAGGCAGTTTAACATAGTGACGAGGGAGCATCCTCATGACGAGAAAG CTTGGTTGGATTATGCTGAGTTTCAGGACAAGGTTGCAAGTATGCAGCCGCAGAAAGCTGCACGCTTGGGGACACTTGATAAGAAGGTGAGCATTCTGGA AAAGGCATCTGAGCTGAATCCTGATAATGAGGAGTTGTTGCTTGGCCTTTTGAAGGCGTATCAGAGACGGGACAATGCAGATGTTCTCATGGGTAGGTGG GAGCGGGTCCTTATGCATCATTCTGGCAGCTGTAAGTTGTGGAAAGAGTATTTGAATGTTGTTCGAGGGGAATTTTCGAGATTTAAGGTGTCTGAGTTGA GGAAAATGTATGCACATGCAATTCAAGCTCTATCTACTGCGTGCAGCAAGCAGTCTAGGCAGGTTCACCAGAATGCCAAGCCGACTTCTATCGATCCTGA CATTCTTGAGCTAGAACTTGGTCTTGTTGATATATTTGTAAGCCTTTGTAGGTTAGAGTGGCAGGCGGGTTATCAGGAGTTGGCCACTGCACTATTTCAA GCAGAAATTGAGTTTAGTTTGTTCTGCCCATCATTGCTTCTGAGTGAAAATGCTAAGCTTAGATTATTTGAGCATTTTTGGAATAGTGAAGCTCCAAGAA TGGGAGAAGAAGGGGCTGTTGGCTGGTCAACGTGGTTGGAGAAAGAAGAGGAGAATAGACAAAGGATTTTGAGAGAGGAGATGTCCCGTGAAGAGGAAAG AGGTGGTTGGACTGGCTGGTCAGAGCCACGGCCTAAACATGAGGAAATTGGAGAGGCAGAAATTATAGACAGCTTAGAAGGGGCTATTGAGAATAACCAG GAAGAAAACGAAGATGGAGACACCAATCAGGAAGATGATATTGAAACATTGTTAAAGAAGTTGGGAATTGATACGGATGCTGAGGCCACAGGGGAGGTCA AAGACACTTCGACCTGGGCTAGATGGTCTGAAGAAGAGTCGTTACGAGATTCAAACCAATGGCTACCAGTTCATGGAAAAGCAGGTGTCTCAGATCAGAT TCAGAGTGGAACATCTGATGGAGAAACTGATGAGCAGCTGTTGAGAATTGTAATGTTTGAAGACATTAATGGGTTCTTGGTCTCAATTAATTCGTGCGAA GCCCTCTTGTCTCTTGTTTCTCAATTTGTTGAGTTCTTTGGTGGGCACATGCCACAAGGGTTTTGCACCAATAGCTCAAGTTGGACAGAGCAAATCCAGA TGGTTGAGTCATTGCCGGATTCGATATCACAGAATCTGAAAGGAGTTACTGACTTGCTAGTCAAGCCACCGAGCTTACCTGTTAACAATTTGGAGTTCCT GCTTGGTGGTGCTGGTGACAGTTCTAAGAGAACTGATATGATGAAGTTTCTTCGTAATGGTTTATTACTTTGTCTATCCGCTTTTCCACGTAATCACAAA TTGGAGGAAGCTGTCCTTCTTGCGGAAGAATTATCTACTACTCAAACTGATTCTTCTACTACACCATGCAGAGCCCTGGCCAAGACCCTCTTGAAAAGTG ATAGACAGGATTTGTTGCTTTGTGGTGTATATGCCCGAAGGGAAGCTGCATTTGGTAATATTGGCCATGCAAGAAGAGTCTTCGACATGGCACTGGCATC AATTGAAGCGCTCCACGTGGACTTCCAATCCAATTCTCCTCTTCTGTATTTCTGGTACGCCGAAATGGAGCTTACTGATAGTGGTGCTGGCAACAAGCAA GAACCGTCTCGTGCATTGCATATCTTATCATGCTTAGGAAGTGGGACTAGATACAGCCCCTTCGAACATAACCCATCGAGCTTGCAGTTATTGAGAGCAC GCCAAGGGTTCAAAGAACGGTTGAAAATGGTGAGATCCGCATGGATTCATGGTTCAATAGACGATCAGACTGTCGCTCTTACTTGCTCAGCTGCTTTATT CGAAGAACTGACCTCCGGATGGACAGCTGGTGTTGAAGTTCTGGACGAGGCTTTTACCATGGTGCTTCCAGAAAGAAGAAGTCGAAGTCGTGAGCTCGAA TTTTTGTTCACATACTATGTAAAGATGCTGCTCAGACACCATAATGAGTTGAATTTTTCGAGAGTATGGGGGACCATCTTAAAGGGGCTGCAAATGTATC CTTCTAACCCTGAACTGTTCAAGACCTTTGTGGAGATCGGAAATCTCTACACGACGCCAAATAAGTTGCGATTGATGCTCGATGATTACTCTCACAAGAA ATCGGGTATCATTGTATGTCTATTTGCGTTATCGTTCGAGATGGCCAAGGGCGGAACCCAACACAGAATCCATGGATTGTTTGAGAGAGCACTGGAAAGC GAAAGTCTGCACAGCTGCTCGATCGTTCTCTGGCGTATGTACATCTCGTACGAGATCAACGTAGCATGCAATCTCTCTTCAGCTAGACGAATCTTCTTCC GCGCCATTCATGCCTGTCCATGGTCGAAAAAGCTGTGGCTGGACGGGTTTCGGAGTCTGAAGTCGATCCTAACGGTGAAGGAGCTTTCGGATCTGCAAGA CGTGATGCGTGAGAAGGAATTGAACCTGAGGACAGACATTTACGAGATACTTCTCCAGGAGGATGAGATTGTATGA
AA sequence Show only first row Show all	>Lus10031899 pacid=23180690 polypeptide=Lus10031899 locus=Lus10031899.g ID=Lus10031899.BGIv1.0 annot-version=v1.0 MEKGEEAAANPSSLFPLFAAASSSVTTPLRHGATTSTAPASDTWLQNVSFTADVRVINEAVTSSLRQDAAPDDGCDSDSDEGRPGGTNPTVPSYELVEEE GYQQEMKDGKDGARIYSTDSDYRSDGDKGRKHRSKKKKKAGGGSKRKRSEDRYGGFASRKSNVRNWADSDAKPAKDYYFDGHGDRDNLAYGSLYRMDVPR YKPYSTASPYGVNMKGMCRFNQKGKTLDADADVDVLDTKLKSDGRYWSPKYASLVRHKNLKRLRFLAPTEPEVTESEDFIPLLDNSQFSRQDEVDQAASS SKASIVEESWDDEMLRKTRQFNIVTREHPHDEKAWLDYAEFQDKVASMQPQKAARLGTLDKKVSILEKASELNPDNEELLLGLLKAYQRRDNADVLMGRW ERVLMHHSGSCKLWKEYLNVVRGEFSRFKVSELRKMYAHAIQALSTACSKQSRQVHQNAKPTSIDPDILELELGLVDIFVSLCRLEWQAGYQELATALFQ AEIEFSLFCPSLLLSENAKLRLFEHFWNSEAPRMGEEGAVGWSTWLEKEEENRQRILREEMSREEERGGWTGWSEPRPKHEEIGEAEIIDSLEGAIENNQ EENEDGDTNQEDDIETLLKKLGIDTDAEATGEVKDTSTWARWSEEESLRDSNQWLPVHGKAGVSDQIQSGTSDGETDEQLLRIVMFEDINGFLVSINSCE ALLSLVSQFVEFFGGHMPQGFCTNSSSWTEQIQMVESLPDSISQNLKGVTDLLVKPPSLPVNNLEFLLGGAGDSSKRTDMMKFLRNGLLLCLSAFPRNHK LEEAVLLAEELSTTQTDSSTTPCRALAKTLLKSDRQDLLLCGVYARREAAFGNIGHARRVFDMALASIEALHVDFQSNSPLLYFWYAEMELTDSGAGNKQ EPSRALHILSCLGSGTRYSPFEHNPSSLQLLRARQGFKERLKMVRSAWIHGSIDDQTVALTCSAALFEELTSGWTAGVEVLDEAFTMVLPERRSRSRELE FLFTYYVKMLLRHHNELNFSRVWGTILKGLQMYPSNPELFKTFVEIGNLYTTPNKLRLMLDDYSHKKSGIIVCLFALSFEMAKGGTQHRIHGLFERALES ESLHSCSIVLWRMYISYEINVACNLSSARRIFFRAIHACPWSKKLWLDGFRSLKSILTVKELSDLQDVMREKELNLRTDIYEILLQEDEIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17740			unknown protein		Lus10031899 [exp]	0	1
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	2.0	0.8159
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	2.6	0.8714
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	3.7	0.7960
					Lus10042671 [exp]	3.9	0.7721
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	4.9	0.7824
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	5.7	0.8338
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	6.0	0.7920
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	6.5	0.8115
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	7.1	0.8126
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010186 [exp]	7.5	0.7948

Compare expression of checked genes

Lus10031899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.