Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16140 333 / 1e-116 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G38290 315 / 1e-109 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G19830 227 / 4e-75 Peptidyl-tRNA hydrolase family protein (.1) AT1G18440 218 / 7e-71 Peptidyl-tRNA hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031327 [exp] 300 / 9e-105 AT5G38290 240 / 2e-81 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10042977 [exp] 217 / 3e-71 AT1G18440 345 / 6e-121 Peptidyl-tRNA hydrolase family protein (.1) Lus10014589 [exp] 216 / 8e-71 AT5G19830 316 / 2e-110 Peptidyl-tRNA hydrolase family protein (.1) Lus10032480 [exp] 207 / 6e-67 AT1G18440 332 / 5e-115 Peptidyl-tRNA hydrolase family protein (.1) Lus10032093 [exp] 182 / 1e-54 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098100 [exp] 387 / 4e-138 AT5G38290 348 / 3e-122 Peptidyl-tRNA hydrolase family protein (.1.2) Potri.001G005000 [exp] 224 / 7e-74 AT5G19830 327 / 4e-115 Peptidyl-tRNA hydrolase family protein (.1) Potri.012G061100 [exp] 214 / 2e-69 AT1G18440 343 / 2e-119 Peptidyl-tRNA hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01195 [flax] [poplar] Pept_tRNA_hydro Peptidyl-tRNA hydrolase
Representative CDS sequence Show only first row Show all	>Lus10031901 pacid=23180602 polypeptide=Lus10031901 locus=Lus10031901.g ID=Lus10031901.BGIv1.0 annot-version=v1.0 ATGTTGCAAGCAACTACTGCCCCTGGAGTTTGCATATCCTGTCCAAGGGTTTCGATTACACCTCGAAGGCGTCTTCGTATACGAGCTTCTTCGATAGGGT ATGGAGATGGATCGAAAGTGGAGTACACTCCTTGGCTCATTGTAGGATTGGGGAACCCTGGGAACAAGTACCATGGTACCCGGCACAATGTTGGTTTCGA AGTGGTGGATCGAATAGCAGAGAGGCATGGTGTCGTCTTGAACACTATACAATCGAAAGCTGTAATTGGAATAGGATGTGTTGGGGAGGTGCCAATCCTG TTGGCGAAGCCACAAGCTTACATGAATTTCAGTGGCGAATCGGTTGGACCTCTTGCTGCATACTATCAAGTGCCCCTTCGGCATATTCTATTGATATACG ATGAGATGAGCGTGGCGAATGGTGTTATGGGTCTTCAGCCAAGAGGTGGCCAGGGCCATCATAACGGAGTCAAGAGTGTGATCGACCATTTAGATGGATG TCGACAGTTCCCTCGATTATGCATAGGCATCGGGAACCCACCGGGGACGATGGACATGAAGGCTTTCCTACTACAGAGATTCAGCCCTGCCGAGCGAACT CAGATCGATATAGCGACGGAGCAAGGGGTTGAAGCTGTGACCAACTTGGTGCTCAATGGATTCACCCAAAAGATTACCAGATTCAATCTCAGCCAGAAAT ACAAGTATCACAAAGTGTAG
AA sequence Show only first row Show all	>Lus10031901 pacid=23180602 polypeptide=Lus10031901 locus=Lus10031901.g ID=Lus10031901.BGIv1.0 annot-version=v1.0 MLQATTAPGVCISCPRVSITPRRRLRIRASSIGYGDGSKVEYTPWLIVGLGNPGNKYHGTRHNVGFEVVDRIAERHGVVLNTIQSKAVIGIGCVGEVPIL LAKPQAYMNFSGESVGPLAAYYQVPLRHILLIYDEMSVANGVMGLQPRGGQGHHNGVKSVIDHLDGCRQFPRLCIGIGNPPGTMDMKAFLLQRFSPAERT QIDIATEQGVEAVTNLVLNGFTQKITRFNLSQKYKYHKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	0	1
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	2.0	0.9357
AT3G10405			unknown protein		Lus10037959 [exp]	4.6	0.9408
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10014911 [exp]	7.8	0.8783
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	7.9	0.8916
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	8.0	0.9020
AT2G35450			catalytics;hydrolases (.1)		Lus10037047 [exp]	8.1	0.8972
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	8.5	0.8962
AT5G02710			unknown protein		Lus10003988 [exp]	13.0	0.8805
AT4G02725			unknown protein		Lus10006915 [exp]	13.0	0.9330
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	17.0	0.9094

Compare expression of checked genes

Lus10031901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.