Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73460 1301 / 0 Protein kinase superfamily protein (.1) AT1G73450 1280 / 0 Protein kinase superfamily protein (.1) AT3G17750 1187 / 0 Protein kinase superfamily protein (.1) AT2G40120 522 / 2e-173 Protein kinase superfamily protein (.1) AT4G03175 182 / 3e-53 Protein kinase superfamily protein (.1) AT5G35980 194 / 6e-51 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G24740 173 / 1e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT1G13350 173 / 2e-44 Protein kinase superfamily protein (.1.2) AT4G32660 163 / 2e-43 AME3 Protein kinase superfamily protein (.1.2.3) AT3G25840 165 / 4e-42 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042297 [exp] 1766 / 0 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10031329 [exp] 1466 / 0 AT1G73460 645 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 957 / 0 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 535 / 5e-177 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 527 / 3e-172 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 431 / 5e-144 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 202 / 6e-53 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 202 / 9e-53 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 168 / 1e-44 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 1605 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 1575 / 0 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 547 / 0 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 545 / 4e-180 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 209 / 2e-55 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 197 / 1e-51 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 170 / 9e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 174 / 3e-44 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G119100 [exp] 174 / 5e-44 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G085700 [exp] 165 / 1e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031902 pacid=23180568 polypeptide=Lus10031902 locus=Lus10031902.g ID=Lus10031902.BGIv1.0 annot-version=v1.0 ATGACGGACTCAAATTCAGTGGACGTGATCCTAGAGTTTCTGCGGAGAAACCAGTTCACTAGAGCTGAGGCAGCGTTACGCAGTGAGATTGACAGTCACC CTGATCTGAATGGATTTTTTCAGAAGCTTACCGTTGACAGCAAGGAGCCAGGGCAAGTTTCAGAAGAGCAGAATGGGAGAAGACCAGTGACTAATGCTCA GGGCTATGGTGATGGTTGTGAAGTTTCTAAAGAACTTATAGTTAAGGAGATAGAGTGCAGTACTCATGGAAATGGGTCTGAGGGAAGATGGAAAGCTTCG GATTTGAACGAGGACCGCAGTGTAAAACCCAGTGAAACAGTTTGTGGGAATGATTCTGGGGATACTGTCATAGATTTATATTCTTGGAAACCTCTCTCTA ACAGTGGTCCTAATCCTTACCAGAATGATGGAACTAGTACAAGCAACTTCTCTGGAAGAACAGAGCTATCTAGAGAGGATGCCACCTTCTCAAATGTGAA GAAAAATTTATGGCAGGGAAGTAATAGTGGTGCTCTGATCCCTGAGTCTAAGAGTCGTAAAGTTCAGACAAGTGATCAGATCGAGTTCGGTCAGCTACAC ACATGGTCTGGACCTGAGCAGCCAACAAGTTCGTCAGGGGACATATGGAAAGATTGTTCTGTGAAGACTGTATTACCATTCACTAGTTATGAAACTACTG CTAATGCTTCAGAAAGGAAAAAGGAGAAAAAGAAAGCTGATACTACGGATGTAAGGATTGCCATCAAAGAACAGGTGGATGAAGTTGGAAGAGCTTTATT CTTTGGGAAGTCACAAGAGAGTACTGAACCAAAGATTTTAGGCACGCCAGGTTCTATTGCATCTGATAACCCTAGAGAAGATTTTCCGAGGCTGCCACCT GTTAGACTTAAGTCGGAAGACAAAATTTTGAATGTCAGCTGGCAGGAGAAGTTTGAGCGTGATAAGCCAGGGACCAAGCTTAGCACTGCTGATAGTTCTT TCCTTATGGGGTCATATCTTGATGTTCCTATTGGACAAGAAATCATCTCCTCAGCTGATGACTCAGGTGGAAAAAGAATTGCAGGAGGCAACTGGCTTTC CGTGAGTCAGGGAATCACAGAGGACACATCTGACTTGGTTTCTGGCTTTGCCACTGTGGGGGATGGATTGACCCAGTCAATTGACTACCCAAACGAGTAT TGGGATTCTGATGAGTACGAAGATGATGATGATGTTGGGTACACGAGACAACCTATAGAGGACGAGGCTTGGTTTCTTGCTCATGAAATTGATTATCCCA GTGACAATGAGAAAGGAACAGGACACGGGAGTGTCCCAGACCCTCAGGAAAGAGGTCCATCCAAAGATGAGGATGATGATCAGTCTTTTGCCGAGGAAGA CTCGTACTTCTCTGGGGAAAAATATTTCCAGTCGAACAATGTTGAACCTGTTACAACTTCAGATGATCCTGGTGGACTGTCAGTTACTGAAATTTATGGG AGGACGCATGAACATGACTTGATGGCACAATATGATGGGCAACTGTTGGATGAGGAGGAATTAAGTTTGATGCGCAGTGAACCTGTTTGGCAGGGGTTCG TAACACAAACAAATGAGTTGGTCATGCTAGGAGACGGGAAAGGACTCAGCGATTCGGGTAGGGCACGTTTGGACGATGTTGGTATGGATGATGATCAGCA TGGTTCGGTTCGATCAATTGGTGTTGGCATTAACAGTGATGCTGCTGATTTTGGTAGTGAAATTCGTGAAAGTGTAATTGGTGGTAGCAGTGAAGGGGAT CTAGAGTACTTTCGTGATAATGATGTTGGGTTTTATAGAACAAGTGACCAAGACCCATATAAGAAATATGTTGATAAACAAAGTAAGAATAAAATCAAGG CTAGCAAACAAGACTCAGCTAACTTTGCGATTGATAAACTCACTTATAGTCAACATAGACCTCAGATGGAGGGAGGTTTTTCATTTCCTCCTCCACTGGG GAACGACCAGGCTGTCCAGGCAGCGTCTAGTAAGCCGATGTGGTCTAACAAGTCTGATGCTGTTATAGCGGATGAAAGCAGTGACCATCTGTATGCCTTG ACTATGCCTGATGACATGCTAGCTGGATGGAGGCAGAAAAGTATTAGTTCTTCACCTGCCAAAAGTTCTAAGGAAGGAAATAGTGCTCATGCTTCTGGAT CTGGAGATTCAACCCCCTCGACACTTTCACATTATGGGTATGCTGAGCAAGAGCGTGCCAAGAAAGAGAGTGCAGAGACTAATGGTGTCGGGGAAGAAGA ACCTGGGGTTTCACTTGAGGATGAAGAGGCAGTTGCTGTTCAAGAGCAAATTAGGCAAATCAAAGCACAAGAAGAAGAATTCGAAACTTTCAACCTGAAG ATCGTGCATAGGAAAAACAGGCAGACCGGCTTTGAGGAGGACAAGAACTTCCATGTCGTTTTGAATTCCGTGCTAGCGGGGCGTTACCATGTTACCGAGT ATCTTGGATCAGCTGCTTTCAGTAAAGCCATTCAGGCTCATGATCTGCATACAGGCATGGATGTCTGTGTGAAGATCATAAAAAACAACAAGGACTTCTT CGATCAGAGCCTTGACGAGATAAAGCTTCTGAAGTATGTGAACAAACACGATCCAGCTGACAAGTATCACATTCTCAGATTATATGATTATTTCTACTAC AGGGAACATTTATTGATTGTATGTGAACTTCTAAAGGCTAACTTATACGAGTTCCACAAGTTCAATCGAGAATCTGGAGGAGAAGTGTACTTCACTATGC CTAGATTGCAGTCCATTACAATCCAGTGTCTGGAAGCACTTCGGTTTTTGCACGGCCTTGGCCTTATTCACTGTGATTTGAAACCTGAGAACATATTAGT GAAAAGCTACAGTAGATGCGAGGTGAAAGTCATCGATCTCGGAAGCAGCTGTTTCGAGACCGATCACTTGTGCTCCTACGTCCAATCTAGATCCTATCGA GCACCGGAGGTCATCCTAGGCCTTCCGTACGATAAAAAGATAGATGTCTGGTCACTTGGGTGCATCTTGGCCGAGCTTTGTACTGGCAATGTCCTCTTCC AAAATGACTCACCGGCAACTCTACTTGCCCGAGTTATCGGAATTATTGGCTCAATTGATCAAGAAATGCTGGCGAAAGGACGGGATACTTACAAGTACTT CACCAAAAATCACATGCTTTACGAACGAAATCAGGAGACGAACCGACTGGAGTATCTGGTACCGAAGAAGACATCACTGGCTCACCGATTGCCAATGGGT GACCATGGCTTCATTGATTTCGTTAGGCATTTGCTTGAAGTAAACCCTTCAAAACGTCCTTCTGCTGCCGAGGCTTTGAAGCACCCATGGCTGTCGTTCC CTTATGAACCCATATCGGCGTAA
AA sequence Show only first row Show all	>Lus10031902 pacid=23180568 polypeptide=Lus10031902 locus=Lus10031902.g ID=Lus10031902.BGIv1.0 annot-version=v1.0 MTDSNSVDVILEFLRRNQFTRAEAALRSEIDSHPDLNGFFQKLTVDSKEPGQVSEEQNGRRPVTNAQGYGDGCEVSKELIVKEIECSTHGNGSEGRWKAS DLNEDRSVKPSETVCGNDSGDTVIDLYSWKPLSNSGPNPYQNDGTSTSNFSGRTELSREDATFSNVKKNLWQGSNSGALIPESKSRKVQTSDQIEFGQLH TWSGPEQPTSSSGDIWKDCSVKTVLPFTSYETTANASERKKEKKKADTTDVRIAIKEQVDEVGRALFFGKSQESTEPKILGTPGSIASDNPREDFPRLPP VRLKSEDKILNVSWQEKFERDKPGTKLSTADSSFLMGSYLDVPIGQEIISSADDSGGKRIAGGNWLSVSQGITEDTSDLVSGFATVGDGLTQSIDYPNEY WDSDEYEDDDDVGYTRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPSKDEDDDQSFAEEDSYFSGEKYFQSNNVEPVTTSDDPGGLSVTEIYG RTHEHDLMAQYDGQLLDEEELSLMRSEPVWQGFVTQTNELVMLGDGKGLSDSGRARLDDVGMDDDQHGSVRSIGVGINSDAADFGSEIRESVIGGSSEGD LEYFRDNDVGFYRTSDQDPYKKYVDKQSKNKIKASKQDSANFAIDKLTYSQHRPQMEGGFSFPPPLGNDQAVQAASSKPMWSNKSDAVIADESSDHLYAL TMPDDMLAGWRQKSISSSPAKSSKEGNSAHASGSGDSTPSTLSHYGYAEQERAKKESAETNGVGEEEPGVSLEDEEAVAVQEQIRQIKAQEEEFETFNLK IVHRKNRQTGFEEDKNFHVVLNSVLAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYY REHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALRFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYR APEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGSIDQEMLAKGRDTYKYFTKNHMLYERNQETNRLEYLVPKKTSLAHRLPMG DHGFIDFVRHLLEVNPSKRPSAAEALKHPWLSFPYEPISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73450			Protein kinase superfamily pro...		Lus10031902 [exp]	0	1
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	3.0	0.9000
AT1G10180			unknown protein		Lus10040609 [exp]	7.3	0.8889
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	8.9	0.8904
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	9.2	0.8868
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	15.4	0.8633
AT4G31880			unknown protein		Lus10017121 [exp]	19.6	0.8866
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	22.0	0.8618
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	23.1	0.8888
AT1G18610			Galactose oxidase/kelch repeat...		Lus10017860 [exp]	31.0	0.8516
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	31.1	0.8765

Compare expression of checked genes

Lus10031902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.