Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02061 362 / 6e-123 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G14590 351 / 4e-119 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 340 / 6e-115 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 333 / 4e-108 unknown protein AT4G15970 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 206 / 3e-63 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 202 / 1e-62 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 199 / 1e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 172 / 3e-50 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 49 / 3e-06 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031330 [exp] 719 / 0 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 361 / 4e-123 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 359 / 2e-122 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 346 / 1e-117 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 343 / 6e-116 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 335 / 2e-114 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 331 / 1e-111 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 316 / 3e-105 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017982 [exp] 219 / 2e-67 AT1G14590 200 / 4e-60 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 397 / 2e-137 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 394 / 1e-136 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 380 / 1e-130 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 371 / 1e-126 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 219 / 2e-68 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 218 / 7e-68 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 209 / 4e-64 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 209 / 8e-64 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 46 / 3e-05 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G042700 [exp] 43 / 0.0003 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10031903 pacid=23180779 polypeptide=Lus10031903 locus=Lus10031903.g ID=Lus10031903.BGIv1.0 annot-version=v1.0 ATGACCGGCGATCAGCTTCAGGGGATCAAAAACGTTGGCGGAGGGGGCAAAAAGGGTCAGCAGAATTCTTCTTACTCCGGGTTGCCGCAATTCCTCCTCC TCCGGCGGCGGAGCCTGGAAGTATCGGCGGCGGTCTTCATCGGAATCACCATGTGCTATTTGTTTCTCTACCGGTCTCTATACGACTCTTCCACCTTATC GGCCAGGATGATTATTCCCAGTTCATTTGTCCCGGTTTCCAAACGTGGGTCGTTCCCGGCGGACTGGTCGGAGTTCTCTTCTCTGATCCCGGAAATCAAC GATCCAGAGCTAAACAGAGTACTGAAACTCGCGGCCGCAACGTCAACGGAATCAAATAGTCAACTAATCCCTCATGCTACGGTGATCCTGACGACGCTAA ACTCCGCGTGGGCGGAACCAGGGTCGGTCCTGGACCTATTCCTGGAGAGCTTTCGAGTCGGGAATGGAACTCGAGACCTTGTTAAGCATCTGGTCATCGT GTCGCTTGACCAGAAGGCACACCGGCGGTGTACGGCGGTACATCCGCATTGTTACGCGCTGACGACGCCGGGGGTTAACTTCACCGGGGAAGCATCGTTC ATGACTCATGAGTATTTGCTCATGATGTGGCGTCGTATTGACTTCTTGGCTTCTGTGTTGCGCTTGGGATACGACATCGTTTTTACGGACGCAGACATAA TGTGGCTAAGAAACCCATTCCCGCACTTCGACAAATCAGCCGATTTCCAAATCGCATGCGACTGGTACTCGCGCAAATCCCCGACCGACCGCCGCAACAG TCCCAACGGCGGGTTCACCTTCGTTCGGTCCAACGTCCGGACCCTCCAGTTCTACCGGTTCTGGTACTACTCAAGGAAATACTACCCTAAAATGCACGAC CAGGACGTGCTCAACAAGATCAAATTCGACCCCTTCATCGACTCCATCAAACTGCGTATGAGGTTTCTCGACACTGCTCGCTTTGGCGGGTTCTGCGAGC CCGCCAAGGACCTTAGCATGACGTGCACCATGCACGCCAACTGCTGTGTGGGCCTCAAACATAAGATCCACGACCTCAACGTGGTGCTCCAGGATTGGAA GCACTACTTGGCCTTGCCTCGTGACTCGAGGGCTTCAAGGTCTTTTACTTGGCGGGCTCCTCAGAGGTGCAGGTACGTGGTGTCGATGTGA
AA sequence Show only first row Show all	>Lus10031903 pacid=23180779 polypeptide=Lus10031903 locus=Lus10031903.g ID=Lus10031903.BGIv1.0 annot-version=v1.0 MTGDQLQGIKNVGGGGKKGQQNSSYSGLPQFLLLRRRSLEVSAAVFIGITMCYLFLYRSLYDSSTLSARMIIPSSFVPVSKRGSFPADWSEFSSLIPEIN DPELNRVLKLAAATSTESNSQLIPHATVILTTLNSAWAEPGSVLDLFLESFRVGNGTRDLVKHLVIVSLDQKAHRRCTAVHPHCYALTTPGVNFTGEASF MTHEYLLMMWRRIDFLASVLRLGYDIVFTDADIMWLRNPFPHFDKSADFQIACDWYSRKSPTDRRNSPNGGFTFVRSNVRTLQFYRFWYYSRKYYPKMHD QDVLNKIKFDPFIDSIKLRMRFLDTARFGGFCEPAKDLSMTCTMHANCCVGLKHKIHDLNVVLQDWKHYLALPRDSRASRSFTWRAPQRCRYVVSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031903 [exp]	0	1
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	1.7	0.9554
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	2.4	0.9427
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	4.9	0.9486
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	6.3	0.9412
AT1G52140			unknown protein		Lus10005478 [exp]	6.5	0.9244
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	19.6	0.9338
					Lus10024615 [exp]	19.9	0.9378
AT5G42500			Disease resistance-responsive ...		Lus10021084 [exp]	21.2	0.8928
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	22.4	0.9292
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	22.4	0.8836

Compare expression of checked genes

Lus10031903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.