Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48410 1448 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 1321 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 962 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 490 / 1e-156 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 457 / 2e-145 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 444 / 4e-140 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 417 / 2e-130 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31280 389 / 3e-118 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21030 382 / 2e-117 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31290 358 / 6e-106 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031331 [exp] 1731 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1534 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1531 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 1329 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 1329 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10014386 [exp] 640 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036795 [exp] 540 / 3e-177 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 544 / 8e-177 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 541 / 1e-175 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037100 [exp] 1534 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 1523 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 1333 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 1332 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 1021 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 1019 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 979 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 539 / 7e-175 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 465 / 4e-148 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 456 / 2e-144 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10031904 pacid=23180790 polypeptide=Lus10031904 locus=Lus10031904.g ID=Lus10031904.BGIv1.0 annot-version=v1.0 ATGGTGAGGAAGAAGAGAACGGACGGTCAGTCTGGTAGTGGTGAGGGATCTGAGCCTCAACATTCAGCTGGTTCTGGCCGTGGTTCACCGCCTTCTTCTG AGAGGGGTGGTGGTCCACCTCAGCAAGGATCTCGTGGAGGAGGTTCTCAAGGTGGCAGGGGTGGAGGGCAGCAGTACCAGCAGGGTGGAGGACAGCAGTA CCAGCAGGGCGGTGGGCAGCAGTATCAGCAAGGGGGTGGGCAGCAGTATCAACAAGGGGGTGGGCAGCAGTATCTGCAAGGGGGGAGAGGAGGTGGTTAT GGTGGACGTGGCCGAGGCCGTGGTGAGGGTTCCCAGAATCCTTATGGTGGATCTGGTGAGTATCAGGGTAGAGGAAGGGGAGGGCCACCTAATCAGCAAG GTGGTCGAGGCTATGGTGGTGGTCGAAATGGTGGCCGTGAAGGAGGACCACGAGGACCTCCTTATGGTGGCCAATCTAGACCTCCAGTACCCGAGCTGCC CCAAGCTACGCTGCCTCCTTATCAAGTAGGGTCGAGCTCTCAACCCAAGCTTTCCGAGGCAAGTTCGTCTCAGCCGCCTGAGCCTTCTACTGCTGCAGTA TCAGAACAGATGCAGCAATTAGCAATTTCACAGGAAGCTCCATCTGATCTGGCTATACAGTCTGCTCCACCTGCCTCAACCAAGTCGGTTAGATTCCCTG TTCGTCCAGGAAAAGGGACTGTAGGTTTAAGATGTGTGGTGAAGGCCAATCACTTTTTTGCCGAGCTGCCTGATAAAGATCTGCACCAGTATGATGTCAC CATTACTCCTGAGGTTACATCTAGAGGTGTCAATCGTGCCGTGATTAATCAGTTAGTTGGTTTGTACCGTGAATCTCATCTTGGGAAGCGTCTTCCTGCT TACGATGGAAGGAAGAGCCTATATACTGCTGGGCCCTTGCCTTTCTTGTCCAAGGAGTTCCGAATCACCCTCACTGATGAAGATGACGGGACTGGCGGCC AAAGGAGAGAGAGGGAATTCAAAGTGGTGATAAAGTTTGCTGCGCGGGCAGACCTTCACCATTTAGGACAGTTTTTACAGGGAAGGCAAGCTGATGCACC ACAGGAAGCCCTCCAGGTTCTCGATATTGTTCTTCGGGAATTGCCCAACTCGAGGTATTCTCCAGTTGGACGGTCATTTTATTCCCCTGATCTGGGAAGA AGGCAGCCCCTTGGGGATGGTCTAGAGAGCTGGCGTGGTTTCTATCAAAGTATCCGACCTACTCAAATGGGACTGTCACTCAATATTGATATGTCTTCTA CTGCGTTCATTGAGCCACTGAAAGTTATCGATTTTGTGACTCAACTATTAAACCGGGATGTCTCCTCAAGGCCCTTATCCGATGCTGACCGTGTGAAGAT AAAGAAGGCTTTAAGAGGAGTGAAGGTTGAAGTTACTCATCGTGGGAATATGCGGCGGAAGTACCGTATATCTGGTTTAACATCACAGGCAACTCGCGAG TTGACTTTCCCTGTCGACGAAAGAGGAACCATGAAGTCTGTTGTGGAGTATTTCTATGAAACCTATGGCTTCACATTCAGCATACTCAGTGGCCCTGTCT CCAAGTGGGGAATCAACAAAGGCCTAATTATCTGCCTATGGAGGTACTCCAAGAGATTGAATGAGAAACAAATTACTGCTTTGCTAAAGGTGACCTGCCA ACGCCCTCAGGAAAGAGAACGTGATATTATTCAGACTGTTCAACACAATGCCTATCACAGTGACCCTTATGCAAAGGAGTTTGGTATCAAGATCAGTGAG AGGCTTGCTTCTGTTGAAGCTCGTATTCTGCCCGCTCCACTGCTCAAATATCATGACACTGGCAGGGAGAAGGATTGCTTACCACAAGTTGGCCAGTGGA ACATGATGAACAAGAAAATGGTGAATGGTGGAACGGTGAACTATTGGTTATGCATTAACTTCTCTCGACAAGTTCAAGACACGGTTGCTCGTGGATTCTG TTATGAGCTGGCCCAAATGTGTCACATCTCTGGGATGCAATTTAACCCTGAGCCAGTGCTTCCTCCAATTAGTGCGAGACCAGAGCAAGTCGAGAGGGTT CTCAAAGCCCGATTCCATGATGCTATGATGAAGCTCCGCCCTCTCGGAAAGGAGCTTGATCTGCTGGTTGTTATCCTCCCTGACAACAACGGATCTCTTT ACGGGGACTTGAAGAGAATTTGTGAAACTGATCTGGGGCTAGTTAGTCAATGCTGCCTAACTAAGCATGTCTTCAAAATGAGCAAGCAGTACTTGGCCAA TGTGTCCCTGAAGATTAATGTCAAGGTCGGGGGAAGAAACACAGTTTTGGTAGATGCACTCTCCAGACGCATTCCGTTAGTTAGCGATCGGCCAACTATA ATTTTCGGTGCAGATGTTACTCATCCGCATCCTGGAGAAGACTCGAGTCCATCCATTGCTGCTGTGGTCGCTTCGCAAGACTGGCCAGAGATTACCAAAT ATGCCGGTCTTGTCTGTGCTCAAGCACATCGACAGGAGCTTATTCAGGATCTCTACAAGTCTTGGAATGATTCCGTTCGGGGCCCAGTTTCCGGTGGCAT GATCAAAGAGCTGCTCATATCCTTCCGGCGTGCAACTGGCCAGAAGCCAGAGCGTATCATATTCTACAGGGATGGTGTCAGTGAAGGCCAATTCTATCAG GTTTTGCTGTACGAGCTCGATGCAATTCGTAAGGCATGTGCTTCTCTAGAACCCAACTATCAGCCTCCGGTCACTTTTGTCGTCGTCCAGAAGCGTCATC ACACAAGGCTGTTTGCCAACAACCATCGTGACCGTAACTCTGTCGACCGGAGTGGAAATATCTTGCCTGGTACTGTTGTGGACTCGAAGATCTGCCACCC TACGGAATTCGACTTTTATCTCTGCAGCCATGCTGGAATCCAGGGAACTAGCCGTCCGGCTCATTATCATGTTCTGTGGGATGAGAACAAGTTCTCCGCC GATGGGCTTCAGTCTCTGACGAACAATCTTTGCTACACTTACGCAAGGTGCACTCGCTCTGTCTCCATCGGACGGCAGACTCGCGGCCCTGGCGCCAATG CAACCGTAAGGCCCTTGCCTTCCTTGAAAGAAAACGTCAAGAAGGTTATGTTCTACTGTTAG
AA sequence Show only first row Show all	>Lus10031904 pacid=23180790 polypeptide=Lus10031904 locus=Lus10031904.g ID=Lus10031904.BGIv1.0 annot-version=v1.0 MVRKKRTDGQSGSGEGSEPQHSAGSGRGSPPSSERGGGPPQQGSRGGGSQGGRGGGQQYQQGGGQQYQQGGGQQYQQGGGQQYQQGGGQQYLQGGRGGGY GGRGRGRGEGSQNPYGGSGEYQGRGRGGPPNQQGGRGYGGGRNGGREGGPRGPPYGGQSRPPVPELPQATLPPYQVGSSSQPKLSEASSSQPPEPSTAAV SEQMQQLAISQEAPSDLAIQSAPPASTKSVRFPVRPGKGTVGLRCVVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVINQLVGLYRESHLGKRLPA YDGRKSLYTAGPLPFLSKEFRITLTDEDDGTGGQRREREFKVVIKFAARADLHHLGQFLQGRQADAPQEALQVLDIVLRELPNSRYSPVGRSFYSPDLGR RQPLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLKVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRE LTFPVDERGTMKSVVEYFYETYGFTFSILSGPVSKWGINKGLIICLWRYSKRLNEKQITALLKVTCQRPQERERDIIQTVQHNAYHSDPYAKEFGIKISE RLASVEARILPAPLLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNYWLCINFSRQVQDTVARGFCYELAQMCHISGMQFNPEPVLPPISARPEQVERV LKARFHDAMMKLRPLGKELDLLVVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVSDRPTI IFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLYKSWNDSVRGPVSGGMIKELLISFRRATGQKPERIIFYRDGVSEGQFYQ VLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHRDRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFSA DGLQSLTNNLCYTYARCTRSVSIGRQTRGPGANATVRPLPSLKENVKKVMFYC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031904 [exp]	0	1
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	1.0	0.9679
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	4.9	0.8948
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Lus10039199 [exp]	11.0	0.9031
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	12.2	0.8916
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	13.5	0.8657
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	14.1	0.8528
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	18.3	0.8830
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	18.5	0.8685
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	18.7	0.8987
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	24.8	0.8452

Compare expression of checked genes

Lus10031904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.