Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17850 1270 / 0 Protein kinase superfamily protein (.1) AT1G48490 1204 / 0 Protein kinase superfamily protein (.1.2.3) AT5G62310 788 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 408 / 7e-123 Protein kinase superfamily protein (.1.2) AT3G08730 185 / 3e-50 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G08720 182 / 6e-49 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT5G09890 141 / 5e-35 Protein kinase family protein (.1.2) AT4G14350 140 / 1e-34 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT1G30640 140 / 3e-34 Protein kinase family protein (.1) AT3G23310 134 / 2e-32 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031332 [exp] 1917 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10027196 [exp] 785 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 778 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 485 / 7e-153 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025213 [exp] 187 / 2e-48 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 179 / 6e-47 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 176 / 1e-45 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 137 / 3e-34 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 132 / 4e-34 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035600 [exp] 1508 / 0 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.012G044700 [exp] 1490 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 818 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 798 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 578 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G138400 [exp] 179 / 4e-48 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 178 / 1e-47 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 166 / 1e-43 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.014G028900 [exp] 130 / 2e-31 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.006G080500 [exp] 124 / 3e-31 AT2G45490 470 / 2e-169 ataurora3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031906 pacid=23180684 polypeptide=Lus10031906 locus=Lus10031906.g ID=Lus10031906.BGIv1.0 annot-version=v1.0 ATGTTAGGGATTGAGCTCGGAACTACTGTATCATCATCATCAGAAGAAGAAGAAGAAGAAGAAGAGGAACCACCACCAGCAGTTAACTCAATCGGAGAAA CCCTAGCGAGAAGCGAGCTGCTGCTGCTATGGTGTTCAAGAACAAGCTCTTCTTCTCGTCGAAGAAGTCGTCATCGGATGCATCAAGTCCGACCGATGGT GGTGGATCTTCCAACAGTCCTCGATCCATCGGGTCGAACTCCCCGATCCGGAGCAGCGAGAAGAAGAAGTCTAAGTCGTCTTCGTCTTTCTCGTCCTCGT CGAAGGACAACAGCCCCAGCTTTTCCTCCGCGGGTGCCGCGGCAGGGGGGGCCCGGGGGGGGGGCGGCGGCGGCGGCCGGGTGTAAGCAGGTTCAGGTGA AGGATGGGCTGAAGAAGAAGGAGAGCGTCGTGAAGGGGAAAGAGAGTGTTCAATTGATCAGTAAGGCTTCTTCTCCTGCTCATCATCCTAAGTCCCAGCC GCAAACGCCTGTTAAGCAAGGCGGAGGAGGAGGAGGAGGATTCTCTGCTTCGGTACTTGGTTCTACTTCTGCTTCAGCTTCACCTTCGGCTTCAGGGTCT AAGTTGAGGAAAGGTTTGGGGAGTGGTAAGGATGATGCGTTGTCTGTGTCTCCGATATTGGCTTCTTCGTTGGGGTTGAATAAGATAAAGACACGGTCAG GGCCATTGCCTCAGGAGAGTTTCTTTGGTTATAGAGGGGATAAGGGGTCTGGGGTGCTTGGTTCCAGTAATTTGTCGAGGCCTGGTGGTGGAGATGGTGG ATTCGGTTCGAATTCGGTGAAGAAGGAGGATGTTACTGGAAAGGGTAGGATGACAGGGTTTCAGGACCGTAGTGGTAAAGCAGTTGATACTAGCAGCAAT TGGGATCGGGTGTCTTCTGGTAGTGGAGGGCAGACTAGAGAGGTTACTCCAAATCCGCAGCCAGGAATGAAGTTGGACAATGGGGAACCATCTAACGATG CAGGTCGGAATGAGTCATCCTGGGGTCGTTCTGGTGGTGTGAGAAGTTCGGATGTTTTTACACCAGAGGAGTCTGAGTCGCCACGTCTCCAAGCTATCCT ACGTCTAACTAGTGCACCAAGAAAGAGATTTCCATCTGACATAAAAAGTTTTTCTCATGAACTCAATTCCAAAGGCGTGCGCCCATTCCCCTTTTGGAAG CCTCGTGGACTGAATAATGTGGAGCAAGTATTGGTTGTTATACGAGGAAAGTTTGACAAGGCAAAGGAAGAGGTGAATTCGGATCTGGCTATCTTTGCAG CTGATCTTGTTGGAATCCTTGAAAAGAATGCAGAAAGTCATCCTGAATGGCAGGAAACTATAGAGGACTTGTTGGTCTTGGCCAGGAGTTGTGCTATGCA ATCACCTGGAGAGTTTTGGCTTCAATGTGAAAGTATAGTCCAAGATTTGGATGACAGACGCCAAGAACTCCCTCCAGGAACGCTGAAGCAACTTCATACT AAAATGCTTTTCATTCTGACTAGGTGTACAAGACTTTTGCAGTTCCACAAAGAAACTGGACTTCCCGATGATGAGAATATTTTTCAACTGCGTCAATCTA GGGTCTTACAAGTACACTCCGCAGAGAAACGCCTTCCTCCAGGTGCTGGAAGGGGCATGAAAAGCTCCACAGCTTCAAAAGTTGCAAAAGGGACTTCAGT GACGAAATCGTACAGTCAAGAACAACACGGGCGAGGTTGGAACCGAGAGCCATTGGTACTGCCTGCAAACTTTCTTTCTCCCACTGAGGCTTCCATTAAT GTTGAGTCTCCTGGAGGTCGAGATAGGATGGCTTCCTGGAAAAAGCTTCCATCACCTGCTGCAAAAGGTCCAAAGGAAATTGCTTCACCTAAGGATCAAA ATGAGGTAAGGGCTGATCCTTTGAAAGTGCCTAGCAACACTAAAGGGATTTCTGATATCGATCTGCCTGCTGCTAAGCCATCTGAGGTCCCCACAGTGAA ACTTGAACATTCTGCGAAGCACCAACATAAAGTTTCTTGGGGATACTGGGGTGACCAAAATCCTGCAGATGAAAATTCAATTATTTGTCGAATTTGCGAG GAAGAGGTTCCAACTTCATATGTTGAAGACCATTCAATAATATGTGCGATTGCAGATCGTTATGATCAGAAAGGTCAAGGTGTGAATGAGCGCCTTTCGA AAATTGCAGAAACTCTTGAGAAAATGATGGAGTCTTTTGCACAGAAGGATATCCAACCTTCTCTAGGGAGCCCTGATGTAGCAAAGGTGTCAAATTCTAG TGTTACTGAAGAGTCCGACATTCCATCTCCCAAGCTAAGTGACTGGTCTAGGAGAGGATCTGAAGACATGCTCGATTGTTTTCCTGAAGCTGATAACTCG CCATTCACGGATGACATGAAGGGCTTGCCATCCATGTCATGCAGAACACGTTTTGGTCCAAAATCTGATCAGGGGATGGCCACTTCATCTGCTGGTAGCA TGACTCCTAGATCTCCATTATTGACACCAAAGAACAGCCAGATAGACTTGCTTCTTGCTGGGAAAGGTGGTTATCCAGAGCATGATGACCTTCCTCAGAT GAATGAACTAGCTGATATTGCAAAATGTGTGTCTACTATGCCTTTGGAAGATGAGCGTTCCGTGCCCTATTTATTATCCTGCCTTGAGGACCTGAGGGTT GTTATTGACAGAAGAAAGTTTGATGCTCTTACTGTGGAAACTTTTGGGGCAAGGATTGAGAAACTTATACGAGAGAAATATTTGCAGCTCTGTGAGCTAG TGGAAGATGAGAAGGTTGATATAGGCAGCACTGTGATCGATGAAGATGCTCCCTTGGAAGATGATGTAGTTAGGAGCCTGAGAACAAGCCCAATACACTC TTCGAAGGACCGCACATCAATTGATGACTTTGAGATAATGAAGCCAATCAGTCGCGGGGCATTTGGGCGGGTATTCCTGGCTAAGAAAAGAACGACTGGA GATCTTTTTGCCATAAAGGTACCTTACCCAGTTCTCATTTCGTATGCTGTCATGATGCTTCTCCTTCCTGTTGGTTGTTTCAGAAAGGTCCTAAAGAAGG CTGATATGATACGCAAGAATGCTGTTGAGAGTATACTAGCAGAACGTGATATTCTAATTTCCGTGCGCAATCCATTTGTGGTTCGTTTCTTCTATTCGTT TACTTGTCGTGAGAACTTGTACCTTGTGATGGAGTATTTAAACGGAGGCGACTTGTATTCATTATTACGTAATATGGGCTGCTTAGATGAAGACGTTGCC CGTGTCTATATAGCTGAAGTCGTAAATCAACAAGAAAGGAGGAAGAAACGTTCTGCTGTGGGCACACCCGACTATTTGGCACCAGAGATTCTTTTGGGAA GAGGACACGGCTTTACTGCTGATTGGTGGTCTGTGGGCGTCATTTTGTTCGAACTCATTGTTGGTATTCCTCCTTTCAATGCAGAGCATCCTCAGATAAT ATTCGACAACATTCTCAATCGGAAGATACCGTGGCCCGAAGTACCTGACGAAATGAGCCCTGAAGCTCGTGATATTATCGATAGATTCTTAACAGAAGAT CCTCATATGAGACTCGGAGCCAGAGGTGCATCAGAGGTAAAGCAACACGTGTTCTTCAAAAACATCAACTGGGACACACTGGCAAGGCAAAAAGCTGCAT TCGTGCCCGCTTCAGACAGCGCTCTCGACACAAGCTACTTCACGAGCCGTTACACGTGGAACACGTCAGACGACAATGCATATCCCGGCAGCGATTTTGA AGATTCGAGCGATGCCGACAGTTTAAGTGGCAGTAGCAGTTGCCTCAGCAATCGTCAAGAAGAAGTGCAGGGAGATGAATGTGGAGGTCTTGCAGAGTTT GATTCGGGTACCAACGTCAATTACTCATTCAGTAACTTCTCGTTCAAGAATCTCTCCCAGCTCGCATCAATCAACTATGATCTTCTCTCAAAGGGTTGGA AAGATGATCCTCCTACAAGCTCATGA
AA sequence Show only first row Show all	>Lus10031906 pacid=23180684 polypeptide=Lus10031906 locus=Lus10031906.g ID=Lus10031906.BGIv1.0 annot-version=v1.0 MLGIELGTTVSSSSEEEEEEEEEPPPAVNSIGETLARSELLLLWCSRTSSSSRRRSRHRMHQVRPMVVDLPTVLDPSGRTPRSGAARRRSLSRLRLSRPR RRTTAPAFPPRVPRQGGPGGGAAAAAGCKQVQVKDGLKKKESVVKGKESVQLISKASSPAHHPKSQPQTPVKQGGGGGGGFSASVLGSTSASASPSASGS KLRKGLGSGKDDALSVSPILASSLGLNKIKTRSGPLPQESFFGYRGDKGSGVLGSSNLSRPGGGDGGFGSNSVKKEDVTGKGRMTGFQDRSGKAVDTSSN WDRVSSGSGGQTREVTPNPQPGMKLDNGEPSNDAGRNESSWGRSGGVRSSDVFTPEESESPRLQAILRLTSAPRKRFPSDIKSFSHELNSKGVRPFPFWK PRGLNNVEQVLVVIRGKFDKAKEEVNSDLAIFAADLVGILEKNAESHPEWQETIEDLLVLARSCAMQSPGEFWLQCESIVQDLDDRRQELPPGTLKQLHT KMLFILTRCTRLLQFHKETGLPDDENIFQLRQSRVLQVHSAEKRLPPGAGRGMKSSTASKVAKGTSVTKSYSQEQHGRGWNREPLVLPANFLSPTEASIN VESPGGRDRMASWKKLPSPAAKGPKEIASPKDQNEVRADPLKVPSNTKGISDIDLPAAKPSEVPTVKLEHSAKHQHKVSWGYWGDQNPADENSIICRICE EEVPTSYVEDHSIICAIADRYDQKGQGVNERLSKIAETLEKMMESFAQKDIQPSLGSPDVAKVSNSSVTEESDIPSPKLSDWSRRGSEDMLDCFPEADNS PFTDDMKGLPSMSCRTRFGPKSDQGMATSSAGSMTPRSPLLTPKNSQIDLLLAGKGGYPEHDDLPQMNELADIAKCVSTMPLEDERSVPYLLSCLEDLRV VIDRRKFDALTVETFGARIEKLIREKYLQLCELVEDEKVDIGSTVIDEDAPLEDDVVRSLRTSPIHSSKDRTSIDDFEIMKPISRGAFGRVFLAKKRTTG DLFAIKVPYPVLISYAVMMLLLPVGCFRKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNMGCLDEDVA RVYIAEVVNQQERRKKRSAVGTPDYLAPEILLGRGHGFTADWWSVGVILFELIVGIPPFNAEHPQIIFDNILNRKIPWPEVPDEMSPEARDIIDRFLTED PHMRLGARGASEVKQHVFFKNINWDTLARQKAAFVPASDSALDTSYFTSRYTWNTSDDNAYPGSDFEDSSDADSLSGSSSCLSNRQEEVQGDECGGLAEF DSGTNVNYSFSNFSFKNLSQLASINYDLLSKGWKDDPPTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	0	1
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	1.0	0.9820
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	2.2	0.9205
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	2.4	0.9388
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	2.8	0.9207
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	3.0	0.9266
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	4.7	0.9050
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	5.7	0.9095
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	8.2	0.8700
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	8.7	0.8942
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	9.5	0.9071

Compare expression of checked genes

Lus10031906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.