Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17910 370 / 6e-122 EMB3121, SURF1 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) AT1G48510 208 / 5e-60 Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1.2) AT3G17860 100 / 9e-23 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 72 / 2e-13 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 44 / 0.0003 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031335 [exp] 569 / 0 AT3G17910 414 / 3e-142 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10031333 [exp] 430 / 5e-144 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10017991 [exp] 205 / 1e-58 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 201 / 2e-57 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031334 [exp] 88 / 4e-18 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045200 [exp] 363 / 2e-119 AT3G17910 388 / 5e-135 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Potri.012G044900 [exp] 164 / 5e-44 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 161 / 4e-43 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 84 / 3e-17 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 73 / 1e-13 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G036000 [exp] 45 / 0.0001 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.018G033700 [exp] 43 / 0.0008 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF02104 [flax] [poplar] SURF1 SURF1 family CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10031907 pacid=23180570 polypeptide=Lus10031907 locus=Lus10031907.g ID=Lus10031907.BGIv1.0 annot-version=v1.0 ATGAGGAATTCAGGAGCTCATCAGTGGTCATTTTCGAACAAAGTTTCGGCTGTTCCGCAGTTCTTGTCGTTCCAGACTGCTACTGATCAAGAGAAGCCAA GGAAGAGTATTTTCGACCAGGTAGCTTCGTCGTCAAGCTTCTTGTCCATCTCCAATGCCGATGCTTTCGACTCTGCTAACAGAAGAGGTTCTTCTTCTAT TCTGCAGAAAAACTGGAACTTTGAAAATAAAGCTGAGAGCATCCATCGAGCTCGTCCGGTCATTGATGCATTTCCAGTCGGCTGCTCCAAGGATATTAGA ACGTTCCCTCTCTCGAATCGGCAGCAGCATCAACCATTTCCTGTTTCTATGAGCACCCCAATTGTGCAGTCTCATTTTACTTCCACTGTACACAGTGGTT ACTATGGGAACTCTATGGGCACTCAACAACTCAGCGGAGTTCCAATAGCTGCACCTGTTATCGGTACTACTGAGCTCAGGAACATCCCTAACTTCTCTGC TCCTTCAGCTCAGTTAACCATCTTTTATGCTGGTTCGGTGTGTGTGTACGACGACGTTTCTCCTGAACAAGCCGAAGCTATTATGTCCATGGCCAGAACC GATTCGTTTACTCCCACCACAACTTTGCATACTCAGCCTGCTACCCGTAACCATCTTGCTACACATGATCACACTGTTCGTAACAGACCGAGTCAAACTC CTCCAGATTCTAGCACTGCCAGCCCCGTGTCAGTAAGCTCGAGTACCAGCAACGAATCCCCAACGGCACGTTCGCTGGTAGCATCGACTAGCATCCACAC TTCTCCTATCCCGAGCAGTTCCTCTCGGCCTGCTCCTGCCGCTCCCGTACCTGCAGCAGTCGGTCTACCTCAGGTCCGTATACCCCAATCTCGCAAGGCT TCGTTGGCTCGATTTCTGGAGAAGCGCAAGGAAAGGGTGACGAGCACAGCATCTCCTTATTACAACATCACTTTTGCTGCTTTGAGTGTAGCAGTAGCTG AGCTCTGGTCTTTCTTCTGCAGCTTGGGCGCCAAGCTCCCGCGCGGAGTCAAATCGGAAACAGGAGAGGCTGAAATGTCTGCTTCTGAAGATGAAATTGT TGAATCCGATATCGAATTGGATATTGCTGATGTCGTGGAGGCCGACAATGATCCCCCCGCAGAAGGTTGGCGATTTGTATTGGGAGGATTGACTACTAGT TTTAGCTCTGAGGAATTAATCGTGCTCATGTTTTTGGTTGTCTTTCATTCACCAGATGGGGAACTTCACGTCTCCAGTGACAGACGAGAGCCGGGATGCT GCTCAGGAAGAGAAAGCAAAAGTTTTCCCAAACCGCGGGAGAATCCAACAGAGCCGGATGTCAAATTCACGATGGCTATGGCGGCAGCTTCCATTTCCAA AACCCTAACCAACAGATCAGTTCTCCAAAGAGATCACTACTGCCGCCGCATCCTGCTCTATTCTTTATATTACAGCACTGACTCCAGCGCCGCTGCCGCC GCTGCCGGCGTTCATCTTTCGTCCACTCCTCCACCTCAAGAACAAGCTAACGGAGGCAGCAAGTGGTCGAGATGGCTGCTTTTCCTTCCTGGAGGTATGA CATTCGGGCTTGGGAGCTGGCAGATCGTCAGGAGGGAGGAGAAGATAAAGGTGCTCGAGCATAGACAGAAGAGATTGGGCCTGGAGCCTGTGAAGTTGAA CAATCCTTCTCCATTAGATAAAAAACTTGAGGCACTGGAATTCAGAAGGGTTTCCTGCAAAGGAGTTTATGATGAAGATAGGTCGATATATGTTGGTCCT CGTTCTAGGAGTATCTCAGGAGTGACAGAGAATGGCTTCTACGTTGTCACTCCCCTCATGCCAGTTCCTGGGAACTCTGAAAGTGTGAAGTCGCTGATTT TAGTGAATAGAGGATGGGTTCCTCGAATTTGGAAAGAAAGATCCTTCGAAACTTCGTCAAACCCCAAACAGCTCCCTCAATCCGATCCATCCATCCCCAC AGCTCAAGAGATCGAAACCAACAGCTCGAGATGGCGGTTTTGGTCAAAGAAGCAGCAGCAGCCACAAACTACCGAGGAGCAACCGCCTTCCATCAATCCC ATAGAAGTAGTTGGAGTGATCCGTGGGAGCGAAAACCCTAGTGCTTTCGTTCCCGCAAATGATCCAAGCTCCGGCCAGTGGTTCTACGTCGACGTTCCTG CAATCGCTGCCGCGTGTGGGCTCCCCGAGGATACCATATACGTGGAGGACGTCCACGAGGATGTTAACTCGAGCTGCCCTTACCCTGTTCCGAAAGATGT CTCTACTTTGATTCGTAGCTCGGTCATGCCACAAGACCACCTAAACTATACGTTGACATGGTAA
AA sequence Show only first row Show all	>Lus10031907 pacid=23180570 polypeptide=Lus10031907 locus=Lus10031907.g ID=Lus10031907.BGIv1.0 annot-version=v1.0 MRNSGAHQWSFSNKVSAVPQFLSFQTATDQEKPRKSIFDQVASSSSFLSISNADAFDSANRRGSSSILQKNWNFENKAESIHRARPVIDAFPVGCSKDIR TFPLSNRQQHQPFPVSMSTPIVQSHFTSTVHSGYYGNSMGTQQLSGVPIAAPVIGTTELRNIPNFSAPSAQLTIFYAGSVCVYDDVSPEQAEAIMSMART DSFTPTTTLHTQPATRNHLATHDHTVRNRPSQTPPDSSTASPVSVSSSTSNESPTARSLVASTSIHTSPIPSSSSRPAPAAPVPAAVGLPQVRIPQSRKA SLARFLEKRKERVTSTASPYYNITFAALSVAVAELWSFFCSLGAKLPRGVKSETGEAEMSASEDEIVESDIELDIADVVEADNDPPAEGWRFVLGGLTTS FSSEELIVLMFLVVFHSPDGELHVSSDRREPGCCSGRESKSFPKPRENPTEPDVKFTMAMAAASISKTLTNRSVLQRDHYCRRILLYSLYYSTDSSAAAA AAGVHLSSTPPPQEQANGGSKWSRWLLFLPGGMTFGLGSWQIVRREEKIKVLEHRQKRLGLEPVKLNNPSPLDKKLEALEFRRVSCKGVYDEDRSIYVGP RSRSISGVTENGFYVVTPLMPVPGNSESVKSLILVNRGWVPRIWKERSFETSSNPKQLPQSDPSIPTAQEIETNSSRWRFWSKKQQQPQTTEEQPPSINP IEVVGVIRGSENPSAFVPANDPSSGQWFYVDVPAIAAACGLPEDTIYVEDVHEDVNSSCPYPVPKDVSTLIRSSVMPQDHLNYTLTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031907 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	1.0	0.9620
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	2.8	0.9472
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	6.6	0.9572
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	7.5	0.9341
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	8.7	0.9492
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	11.6	0.9336
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	11.7	0.9355
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	19.0	0.9411
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	22.2	0.9240
					Lus10003802 [exp]	22.4	0.9315

Compare expression of checked genes

Lus10031907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.