Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17830 447 / 3e-153 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 367 / 2e-122 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G22360 288 / 2e-92 DNAJ heat shock family protein (.1) AT4G39960 284 / 1e-90 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 204 / 6e-60 GFA2 gametophytic factor 2 (.1) AT1G28210 167 / 9e-47 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 128 / 2e-32 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 110 / 5e-26 ATJ3 DNAJ homologue 3 (.1.2) AT5G25530 105 / 7e-25 DNAJ heat shock family protein (.1) AT3G62600 97 / 7e-22 ATERDJ3B DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031336 [exp] 917 / 0 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10023122 [exp] 365 / 2e-121 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 363 / 1e-120 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023148 [exp] 280 / 7e-89 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 279 / 9e-89 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10035920 [exp] 251 / 9e-78 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 218 / 4e-66 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10027634 [exp] 193 / 9e-56 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 190 / 8e-55 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035300 [exp] 544 / 0 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.003G031800 [exp] 365 / 1e-121 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 287 / 7e-92 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 281 / 1e-89 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 199 / 2e-58 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 193 / 5e-56 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 184 / 2e-52 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G015700 [exp] 131 / 2e-33 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 126 / 2e-31 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 123 / 2e-30 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031908 pacid=23180705 polypeptide=Lus10031908 locus=Lus10031908.g ID=Lus10031908.BGIv1.0 annot-version=v1.0 ATGCCGATAATCCAAACCCATTCCTCCCGCCTCATATTACCCAGCTACCACTCTTCCTTTCCAGGTGCTCCAAGTCGACATTGTGATTCCTATTGTTTCG GTTTCTCCGCCGCCTTGTACCACGGCGGGGTTAAATTATCGTCCGGAGCTCGGCGGCGGATTCGCAGCAGGATCGTTACAGCAGCTGCTGCTGGCAAAGA TCACTACACGACGCTGAAAGTGAAAGGGAACGCGTCGTTACAGGAGATCAAGACTGCTTACAAGAAGCTGGCTCTTAAGTATCATCCGGACTTGAACAGG AAACCTGGGGCAGAAGATAAGTTCAAAGAGATTAGTGCAGCATATGAGGTCCTTTCAGATGAGGAGAAAAGGTCAGTGTACGATCAATTCGGAGAAGCAG GCTTGCAAGGGAACTTTGATCCATCAGCTGGTGGTTTCCCAGAAATGGATCCATTTGACATATACAATACCTTCTTTGGCGGTTCAGATGGAATTTTCGG GAAAAGGGACGGCGGTGCTGGCTTTAATTTCAATTTCAGAACTATGGCTAAGCAGGACCTTGACATCAAGTCTAACTTGTACGTGAGCTTGGAAGAATCT GTTCTCGGAGGGGAGCAAGATATTGAAGTTTCTGGTTTCGAGACATGTGAGACCTGTGACGGAACGGGAGCCAAATCCAGCGAATGCGTAAGGTTGTGCA AGGAATGCGGTGGTAGAGGTGATGTGATGAAAACCGTAAGAACGCCGTTCGGAATGATGTCACGGGTATCCACTTGCTCGAACTGTGACGGGAAAGGCAA CGTAATCACTGACTGCTGCCGGGGATGCTTTGGCATTGGCAAAGTAACTGTGACACGGCAAATGACAGTGATCATCCCGCCCGGTGTTTATAATGGAGCC ACAATGCGGCTTCGAGGAGAAGGAAATTTCGATAAGAAGAGAGACATATCTGGCGATCTATTCTTAACCATCAATGTCAATGAGAAACGTGGAATTAAGA GGGAAGGACTCAATCTATACTCGAAGATCAATGTTGATTACACTGAGGCAATACTTGGGGCTGTGTTGAAGGTGGAAACCGTTGAAGGCCCGAAAGACCT ACGTATTCCTCCTGGGATCCAGTCCGGTGAAACTGTAAAATTGCGACGCCTAGGGGTTCCAGACGTAAACAAACCATCTGTCCGTGGCGACCACCATTTC ACGGTGAACGTTCTGATCCCCAAACGTATCAGTGACAGGGAAAGGTTACTCGTGGAAGAGCTGGCATCATTTAGATCAGCCAGCAAAGCCAACGATTTCG CTTCGAATCGGTCCTCCGGTGGTGCATCAATCTGGAGCAGAATCAAAGACTTCCTAGGGAAAGGAAGCGACGAACAGAGCTTTTCGACAATCACTCTCAA CACATCGGCCATGACATTGGCACGAAAACCGGATTCCCCAATCCAGTTGTCAATACTGGGAATCGTTTCCCTAACGATTTTCGTGGCATTCATACGAAGG ATTTGCAAGAGCAGTTAG
AA sequence Show only first row Show all	>Lus10031908 pacid=23180705 polypeptide=Lus10031908 locus=Lus10031908.g ID=Lus10031908.BGIv1.0 annot-version=v1.0 MPIIQTHSSRLILPSYHSSFPGAPSRHCDSYCFGFSAALYHGGVKLSSGARRRIRSRIVTAAAAGKDHYTTLKVKGNASLQEIKTAYKKLALKYHPDLNR KPGAEDKFKEISAAYEVLSDEEKRSVYDQFGEAGLQGNFDPSAGGFPEMDPFDIYNTFFGGSDGIFGKRDGGAGFNFNFRTMAKQDLDIKSNLYVSLEES VLGGEQDIEVSGFETCETCDGTGAKSSECVRLCKECGGRGDVMKTVRTPFGMMSRVSTCSNCDGKGNVITDCCRGCFGIGKVTVTRQMTVIIPPGVYNGA TMRLRGEGNFDKKRDISGDLFLTINVNEKRGIKREGLNLYSKINVDYTEAILGAVLKVETVEGPKDLRIPPGIQSGETVKLRRLGVPDVNKPSVRGDHHF TVNVLIPKRISDRERLLVEELASFRSASKANDFASNRSSGGASIWSRIKDFLGKGSDEQSFSTITLNTSAMTLARKPDSPIQLSILGIVSLTIFVAFIRR ICKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	4.6	0.8870
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	5.7	0.8568
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	5.7	0.8681
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	6.9	0.8653
AT2G44640			unknown protein		Lus10019499 [exp]	8.4	0.8719
AT5G01590			unknown protein		Lus10022672 [exp]	8.4	0.8671
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	10.1	0.8453
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	11.3	0.8674
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	12.1	0.8610
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	12.5	0.8154

Compare expression of checked genes

Lus10031908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.