Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26170 283 / 3e-89 ARM repeat superfamily protein (.1) AT1G24822 42 / 0.0001 unknown protein AT1G25097 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035079 [exp] 379 / 3e-125 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109300 [exp] 294 / 2e-93 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 294 / 2e-93 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10031911 pacid=23161126 polypeptide=Lus10031911 locus=Lus10031911.g ID=Lus10031911.BGIv1.0 annot-version=v1.0 ATGGCCATAGCATCCATAGCTGCTTATGACTGGCCGGAGAATTGGCCTGAACTATTACCATCACTTCTTAGGCTTATCAACGACAAGAGTAATATGAATG GAGTGCAGGGAGCTCTAAGGTGCTTGGCTCTTCTTTCTGGAGATTTGGATGATACAGTGGTGCCAACATTAATACCCGTGTTATTTCCAAGCTTGCATAC AATTGTATCATCTTCTCAGAATTTTAACAAATACCTGCGTTCAAAAGCACTCTCTGTGGTTTATTCATGCGTCTCTATCATCGGGGTTATGAGGGGTGTA TATAAGACGGAAACTACTACATTGATGGCACCAATGGTTAAACCATGGATGGATCAGTTTGCTATCATCTTAGGACAACCCGTTCAATCCCAGGATCCTG ATGATTGGAGCATTAGGATGGAGGTTAGTCTGTACGATTTTGGAAAAGAAAAGCTTGTTGTGACTCTTAATTTTGATATTGTTGTGGAACCTTTGTGGCA AACATTTGTCACTTCTCTGGGTGTATACTTACGGTCGTCAATAGATGGTGCTGAAGATTCATTTGAAGGCAATTATGACTCTGATGGTGCTGAGAAGGGC CTCGATTCCTTTGTCATTCAGGTGACATCCGCTAAGCCATATTTCTAA
AA sequence Show only first row Show all	>Lus10031911 pacid=23161126 polypeptide=Lus10031911 locus=Lus10031911.g ID=Lus10031911.BGIv1.0 annot-version=v1.0 MAIASIAAYDWPENWPELLPSLLRLINDKSNMNGVQGALRCLALLSGDLDDTVVPTLIPVLFPSLHTIVSSSQNFNKYLRSKALSVVYSCVSIIGVMRGV YKTETTTLMAPMVKPWMDQFAIILGQPVQSQDPDDWSIRMEVSLYDFGKEKLVVTLNFDIVVEPLWQTFVTSLGVYLRSSIDGAEDSFEGNYDSDGAEKG LDSFVIQVTSAKPYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	0	1
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	1.0	0.9706
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	3.5	0.9607
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	5.5	0.9515
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	5.5	0.9559
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	5.7	0.9487
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	6.3	0.9519
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	6.7	0.9487
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	8.4	0.9475
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	8.9	0.9394
AT3G55160			unknown protein		Lus10007253 [exp]	8.9	0.9526

Compare expression of checked genes

Lus10031911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.