Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 291 / 2e-95 Protein of unknown function (DUF1262) (.1) AT1G13520 290 / 3e-95 Protein of unknown function (DUF1262) (.1) AT1G13470 283 / 2e-92 Protein of unknown function (DUF1262) (.1) AT1G13530 282 / 8e-92 Protein of unknown function (DUF1262) (.1) AT1G13510 279 / 1e-90 Protein of unknown function (DUF1262) (.1) AT1G13540 267 / 3e-86 Protein of unknown function (DUF1262) (.1) AT1G13500 263 / 1e-84 Protein of unknown function (DUF1262) (.1) AT1G13550 253 / 8e-81 Protein of unknown function (DUF1262) (.1) AT1G13490 246 / 4e-78 Protein of unknown function (DUF1262) (.1) AT1G61600 226 / 1e-69 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035080 [exp] 741 / 0 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 270 / 4e-89 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 265 / 1e-84 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 170 / 4e-51 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 136 / 1e-38 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 61 / 4e-11 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 45 / 1e-05 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109500 [exp] 402 / 1e-138 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 396 / 1e-136 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 389 / 1e-133 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 388 / 2e-133 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 361 / 9e-123 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 322 / 1e-107 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 273 / 2e-88 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [flax] [poplar] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Lus10031913 pacid=23161283 polypeptide=Lus10031913 locus=Lus10031913.g ID=Lus10031913.BGIv1.0 annot-version=v1.0 ATGTACGTGACTCGTCCCCTTTCTTTGTACAGAAGGGATCTTTCTGCAGTGTCTTTGCCTCCTCCAGAAGGACCCAACTCAGGAATACTAGTTATCCAAG ACGAAGAATCTCAGCCAACTTGCCTCTTCGGGTTGTTCAACAGCAGCCACGTCAAAGACCTGCCTTTCCCTCAAAACAAGAACCTCCAAGTTCGATACAC CAAGCAATCCGGTGAGCATCATTATGTCGAAATCCACCGAGTCCTCTTCATCCCCGTTCTCAATCAGCCACTCTCTGCCAATCGTTACTATGTCATCAAG CGCCATGGAAACCACAAGGGGGAAGCTTACAGAAATTCTACAGAGGAGGACATGACAACATGCTGCTTTTGCAATTGCATTCCGGATTTGAAGCCAGAAC CATTTAAGCCACAGGGACAGGACATGTACGAGCAATTTGAGGTCTTCCCACATAAATCTTGGTGTGGAAGGAACGGCTACTTCGCGAGATCCGTAGCTAC AGATGGGTTCCCTCCTCATTTCCTAAGAAGAAACGGCTGGAAGCTCCACACATCGACTCCTCGAGAATTCGAGCTACTCGATGAAGCCTCAGGTGTAGAC TGGAAGCTTCGAGCTCGCCTTCCTGATGATGATGATCGCAATGTTTCGGTGGTGGGGAAGTGGTATTGTCCTTTCTTGTTCATCAAGGAATCGGGAACGG GAGTCCAAGAACAAGTCATCCACTCGCGATTCTACAAGATGACATTGGAGCAACAGTGGGAGCCGATTTTCAGTTGCGGCAATGACATTGTTGAAAGTAG TCATGGTCGTGACTATGTGTCTGTGGATGTTGATGTTGAGACTGAAGGCGTGAGAGTTGGTGGGAGGGATGTTATGGGACATTATGTTGGAGATGTTGAT GGTGATGGAGTGGTGTGGTTTCGGAGGAGTAGTGTCGATGGGAAGACGAATGGTGGTGATGATGGTGAAGTGATCATCCGTGTTGGATTGAGTAAGTTGA TTGTGGAGAGGATTCAATGGGAGGTGGAAAGAGTTGGATGGAGAAGAAGTTGTGAGGATGGGAAGAATGGGGGGACGGTGAGGGTGATCAAGAAAGTTGA TTTTGGGATGAAGAAATGGAAGAGATTTGAGTATTTTGTGTTGGTTGAGAGGTTTGTGTTGAGGAGGATGGATGGGAGTTTTGTGATGAGTTATGAGTTC AAGCATCTTCATCAGTTCAGGACCAAATGGGAGTAG
AA sequence Show only first row Show all	>Lus10031913 pacid=23161283 polypeptide=Lus10031913 locus=Lus10031913.g ID=Lus10031913.BGIv1.0 annot-version=v1.0 MYVTRPLSLYRRDLSAVSLPPPEGPNSGILVIQDEESQPTCLFGLFNSSHVKDLPFPQNKNLQVRYTKQSGEHHYVEIHRVLFIPVLNQPLSANRYYVIK RHGNHKGEAYRNSTEEDMTTCCFCNCIPDLKPEPFKPQGQDMYEQFEVFPHKSWCGRNGYFARSVATDGFPPHFLRRNGWKLHTSTPREFELLDEASGVD WKLRARLPDDDDRNVSVVGKWYCPFLFIKESGTGVQEQVIHSRFYKMTLEQQWEPIFSCGNDIVESSHGRDYVSVDVDVETEGVRVGGRDVMGHYVGDVD GDGVVWFRRSSVDGKTNGGDDGEVIIRVGLSKLIVERIQWEVERVGWRRSCEDGKNGGTVRVIKKVDFGMKKWKRFEYFVLVERFVLRRMDGSFVMSYEF KHLHQFRTKWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	0	1
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	3.6	0.9287
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	4.2	0.9099
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	4.2	0.9157
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	4.7	0.9204
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	4.9	0.9177
AT1G06330			Heavy metal transport/detoxifi...		Lus10013911 [exp]	7.1	0.8816
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	11.0	0.9162
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	11.3	0.9024
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	13.7	0.9060
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	14.5	0.9191

Compare expression of checked genes

Lus10031913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.