Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 114 / 2e-30 Protein of unknown function (DUF1262) (.1) AT1G13550 113 / 4e-30 Protein of unknown function (DUF1262) (.1) AT1G13530 110 / 6e-29 Protein of unknown function (DUF1262) (.1) AT1G13540 106 / 1e-27 Protein of unknown function (DUF1262) (.1) AT1G13470 106 / 2e-27 Protein of unknown function (DUF1262) (.1) AT1G13520 105 / 5e-27 Protein of unknown function (DUF1262) (.1) AT1G13510 100 / 4e-25 Protein of unknown function (DUF1262) (.1) AT1G61600 95 / 4e-23 Protein of unknown function (DUF1262) (.1) AT1G13490 93 / 7e-23 Protein of unknown function (DUF1262) (.1) AT1G13500 92 / 3e-22 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035080 [exp] 176 / 5e-54 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 169 / 3e-51 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 158 / 8e-49 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 142 / 1e-43 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 98 / 2e-24 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 47 / 6e-07 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 47 / 8e-07 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109500 [exp] 143 / 2e-41 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 140 / 1e-40 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 138 / 1e-39 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 138 / 1e-39 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 127 / 2e-35 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 120 / 7e-33 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 106 / 2e-27 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [flax] [poplar] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Lus10031914 pacid=23161194 polypeptide=Lus10031914 locus=Lus10031914.g ID=Lus10031914.BGIv1.0 annot-version=v1.0 ATGTACGTGACGCGTCCTCTATCTCTGTACAGAAAGGATCCATCAGCAGCTTCATTGCCTCCTCCAGAAGGCCCGAATTCGGGGATACTGGTTATCCAAG ACCCAGAATCTCAGCCAACTTCTTTTTTCGGGTTGATCAACAGCAGCCAGGTCAAGGACCTGCCTTTCCCTCAGAGCAAGAACCTCGAAGTTCGATATTC GTATCAAGTTGCTCAGAATACACAAATCGAAGTCAACTACCTCGTCTTCATCCCCGCTGTCGGTCAACCCCTCTCTGCTAATCGCTACTATATCATCAAG CGCCATGGAAAGCATAAAGGGTACGAAAGAGTTGGGTGGAGAAAGGAGAATGATAATGGAGTAGTGAGGGTGAAGAAAGTTGAGGAGTTCAATGGAGGGA TGGAGAAATGGAAGAGATTTGGGTATTTTGTGTTGGTTGAGAGGTTTGTGTTGAAGAGGATGGATGGGAGCTTTGTGATGAGCTATGAGTTCAAGCATCT TCATCAATTCAGAACCAAATGGGAGTAG
AA sequence Show only first row Show all	>Lus10031914 pacid=23161194 polypeptide=Lus10031914 locus=Lus10031914.g ID=Lus10031914.BGIv1.0 annot-version=v1.0 MYVTRPLSLYRKDPSAASLPPPEGPNSGILVIQDPESQPTSFFGLINSSQVKDLPFPQSKNLEVRYSYQVAQNTQIEVNYLVFIPAVGQPLSANRYYIIK RHGKHKGYERVGWRKENDNGVVRVKKVEEFNGGMEKWKRFGYFVLVERFVLKRMDGSFVMSYEFKHLHQFRTKWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	0	1
AT5G23160			unknown protein		Lus10010194 [exp]	5.1	0.9306
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008712 [exp]	7.5	0.9252
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	11.6	0.9291
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	14.1	0.9219
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	16.7	0.9146
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	16.7	0.9270
					Lus10041112 [exp]	16.9	0.9040
					Lus10012705 [exp]	17.0	0.9225
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	17.3	0.9133
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	21.5	0.8994

Compare expression of checked genes

Lus10031914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.