Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13470 73 / 7e-16 Protein of unknown function (DUF1262) (.1) AT1G13490 71 / 6e-15 Protein of unknown function (DUF1262) (.1) AT1G13500 69 / 2e-14 Protein of unknown function (DUF1262) (.1) AT1G13550 69 / 3e-14 Protein of unknown function (DUF1262) (.1) AT1G13540 66 / 3e-13 Protein of unknown function (DUF1262) (.1) AT1G13530 66 / 3e-13 Protein of unknown function (DUF1262) (.1) AT1G13520 64 / 1e-12 Protein of unknown function (DUF1262) (.1) AT1G13480 61 / 1e-11 Protein of unknown function (DUF1262) (.1) AT1G13510 60 / 3e-11 Protein of unknown function (DUF1262) (.1) AT1G61600 45 / 5e-06 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031914 [exp] 130 / 3e-39 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 108 / 1e-28 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 103 / 9e-27 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 45 / 2e-06 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 45 / 3e-06 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 45 / 4e-06 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008300 [exp] 96 / 4e-24 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 95 / 1e-23 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 95 / 1e-23 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 86 / 2e-20 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 86 / 2e-20 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 80 / 3e-18 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 70 / 1e-14 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031915 pacid=23161119 polypeptide=Lus10031915 locus=Lus10031915.g ID=Lus10031915.BGIv1.0 annot-version=v1.0 ATGACGTTGGAGCAACAGTGGGAGCAGATTGTCAGTTGCAATCATAGTGAAGGAAGAAGTGGTGAAAACTCTGTGGATGTGGATGTTGAGGTTGAGAGTG AAGTTGTGAGGGTTGGTGATTGCATGGGGAAGAATGGTGGGGTTGATGGTGAGGGGGTAGTTTGGTTTAAAAGTGTGGGTGGAGGGAATAAGAGTGTTGG ATTGAGTAAGTTGATTGTGGAGAGAATTGAATGGGAGGAGGAAAGAGTTGGGTGGAGAAAGGAGAATGATAATGGAGTAGTGAGGGTGAAGAAAGTCGAG GAGTTCAATGGAGGGATGAAGAAATGGAAGAGATTTGGGTATTTTGTGTTGGTTGAGAGGTTTGTGTTGAAGAGGATGGATGGGAGCTTTGTGATGAGCT ATGAGTTCAAGCATCTTCATCAATTCAGAACCAAATGGGAGTAG
AA sequence Show only first row Show all	>Lus10031915 pacid=23161119 polypeptide=Lus10031915 locus=Lus10031915.g ID=Lus10031915.BGIv1.0 annot-version=v1.0 MTLEQQWEQIVSCNHSEGRSGENSVDVDVEVESEVVRVGDCMGKNGGVDGEGVVWFKSVGGGNKSVGLSKLIVERIEWEEERVGWRKENDNGVVRVKKVE EFNGGMKKWKRFGYFVLVERFVLKRMDGSFVMSYEFKHLHQFRTKWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	3.2	0.7461
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	6.1	0.6160
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	11.0	0.6918
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	13.5	0.6880
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	15.9	0.6859
AT4G24380			unknown protein		Lus10020946 [exp]	24.5	0.6795
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	29.7	0.6857
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10007209 [exp]	36.3	0.6436
AT4G28703			RmlC-like cupins superfamily p...		Lus10025947 [exp]	39.1	0.6011
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	40.0	0.6666

Compare expression of checked genes

Lus10031915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.