Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61600 175 / 1e-52 Protein of unknown function (DUF1262) (.1) AT1G13480 172 / 1e-51 Protein of unknown function (DUF1262) (.1) AT1G13520 171 / 2e-51 Protein of unknown function (DUF1262) (.1) AT1G13530 162 / 4e-48 Protein of unknown function (DUF1262) (.1) AT1G13470 159 / 4e-47 Protein of unknown function (DUF1262) (.1) AT1G13540 152 / 3e-44 Protein of unknown function (DUF1262) (.1) AT1G13550 149 / 4e-43 Protein of unknown function (DUF1262) (.1) AT1G13510 148 / 9e-43 Protein of unknown function (DUF1262) (.1) AT1G13500 139 / 3e-39 Protein of unknown function (DUF1262) (.1) AT1G13490 125 / 5e-34 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035080 [exp] 276 / 4e-92 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 265 / 9e-88 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 157 / 2e-48 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 163 / 5e-48 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T093108 [exp] 234 / 9e-76 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109400 [exp] 234 / 1e-75 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 223 / 3e-71 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 221 / 8e-71 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 207 / 3e-65 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 189 / 3e-58 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 186 / 2e-57 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [flax] [poplar] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Lus10031916 pacid=23161215 polypeptide=Lus10031916 locus=Lus10031916.g ID=Lus10031916.BGIv1.0 annot-version=v1.0 ATGTACGTGACACGTCCTCTATCTCTGTACAGAAAAGATCCATCAGCAGCTTCATTGTCTTCTCCAGAAGGGCCGAATTCGGGGATACTGGTTATCCAAG ACCCTGAAGCTCAGCCGACTTCTTGTTTCGGACTGTGCAACAGCAGCCAGGCGAAGGGCCTGCCCTTCCCTCAAACAAGAACCTGGAAGTTCGATATACA CAACATACAAGTCGAAGCCAATGACGTCGTCTTCATCCCTGCTCTCGCTCAACCTCTCGCTGCTAATCGTTACTATATCATCCAGCGCCGTGGAAAGCAC AAAGGGGAAGCTTATACAAATTCTACAGAGGAGGAGATGACAACATGTTGCTTTTGCAAGCGTATTAAGGACAAGAAGCCAGAACCATTTAAGCCACAAG GGCATGATAACATGTACCAACAATTCGAAATCTTAGCTAATAAAGCTTGTGGTGGAAGCAAAGGCTTCAAAGCCAAATCCATAGCTTCAAATGGGTTCCC TCCTCATTTCCTAAGAAGAAAAGGCTGGAGGCTCCACACCTCAAATCCTCGACAATTCGAGCTACATGAAGCCTTAGGCCTAGACTCGGAGCTTCGAGCT TGCTTCCCTGGTTTCACCTTCCCATTGTCTGATGATGATCACAACCAAGTTGTTACTACTACTCCAAAGCCAACAGTAGTGGTGGGGAAATGGTAG
AA sequence Show only first row Show all	>Lus10031916 pacid=23161215 polypeptide=Lus10031916 locus=Lus10031916.g ID=Lus10031916.BGIv1.0 annot-version=v1.0 MYVTRPLSLYRKDPSAASLSSPEGPNSGILVIQDPEAQPTSCFGLCNSSQAKGLPFPQTRTWKFDIHNIQVEANDVVFIPALAQPLAANRYYIIQRRGKH KGEAYTNSTEEEMTTCCFCKRIKDKKPEPFKPQGHDNMYQQFEILANKACGGSKGFKAKSIASNGFPPHFLRRKGWRLHTSNPRQFELHEALGLDSELRA CFPGFTFPLSDDDHNQVVTTTPKPTVVVGKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	1.4	0.9430
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	3.5	0.9301
AT2G03420			unknown protein		Lus10037118 [exp]	5.7	0.9255
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	5.7	0.8955
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	6.0	0.9188
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	6.3	0.8964
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	10.8	0.8810
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	11.0	0.8894
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034852 [exp]	11.4	0.8953
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	12.6	0.9000

Compare expression of checked genes

Lus10031916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.