Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26180 282 / 6e-94 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035081 [exp] 556 / 0 AT1G26180 317 / 2e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109700 [exp] 312 / 3e-105 AT1G26180 340 / 2e-117 unknown protein Potri.T046554 [exp] 311 / 3e-105 AT1G26180 339 / 3e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031917 pacid=23161332 polypeptide=Lus10031917 locus=Lus10031917.g ID=Lus10031917.BGIv1.0 annot-version=v1.0 ATGGGCTGTAGTAAAAGGCACGAGATGCTAATCCGAGCTCTGGATATTGGGTTGGGCTGGATCATCTGGAGATTGGTCTGCTCGAAATGTAGTTGGGCTG ACATAGGCCCATCCACAAGTCTCGCTCTTCAAATGACTATTATCATCCGGCATCGCAATAAAGAACAACTTCCCCAGCTATCTTCTGTGGAAGAGATGAA CTTCACCAGAAACCAAAATCATAGCTGCTACCGTCCGTTAATTTCCCAAATTTACGATCTCCCCAGTGTTCATCACTTCCCTGAAACACTCCGATTCCCC ACCCCACAAAGATTCTCTTCTCCGACGCATTTGCCGCTCTTCAAGTTGTTGCCGAGCATCTCCAGAATCAATGCATCCGTCGGGGACGGCCTCCGACAAG AAGATGGAGGAGATGATGAGTTTTCCGATGAGATGGACTACTTGGCGCCAGATGGTCCTGTGTACCTCAATACGCTGAGACTTGTGGAGTGCTCTATGTT CGCTGCTGTCACTGGCCTCGTCTATTTCTTAAGCAACTCCCTCTCAATTGAGAATTACTTTGGATGGTTATTTCCGTTGCCAATTGTGATATCATCACTT AGATGGGGTGTGGCAGCTGGGAGGAAAACAATGGTTGGTGTTGCTTCTTTGGTAGCAACTGCTATGCTGTTGTTCGTTCTGTCTGGTCCTGTTAAAGCAT TGACGTATCTGCTGACTCATGGCACAGTTGGTTTGACAATGGGTTCTCTGTGGAGGTATGCGGCTCTAGTGCCTCCTGAGTACTGGCATTTCTGGAACAA TTTGCAGGCTCGAGCAACTGGAGCAATTGGTTACGTCCTAACATCGTCATTTTTAATAAGGGAGAACATACTTGCTCTGATTACAGTAAACATCCACGCT TCACTGAGTTACATGTTCGCTTCTATCGGCATTAACACCATTCCGTCAATGAGTTTCATATACACACTGTTTGGAACTCTTGTGGTGATAAATAGCGGAT TCTCTGTGTTCATACTGCATATGTTACATGCTGTGATCCTGACACGGCTTGGAATGCGGCATTTGTTGAGAGTGCCGGCATGGTTTGACAGGGCCCTTAT AAGCTAG
AA sequence Show only first row Show all	>Lus10031917 pacid=23161332 polypeptide=Lus10031917 locus=Lus10031917.g ID=Lus10031917.BGIv1.0 annot-version=v1.0 MGCSKRHEMLIRALDIGLGWIIWRLVCSKCSWADIGPSTSLALQMTIIIRHRNKEQLPQLSSVEEMNFTRNQNHSCYRPLISQIYDLPSVHHFPETLRFP TPQRFSSPTHLPLFKLLPSISRINASVGDGLRQEDGGDDEFSDEMDYLAPDGPVYLNTLRLVECSMFAAVTGLVYFLSNSLSIENYFGWLFPLPIVISSL RWGVAAGRKTMVGVASLVATAMLLFVLSGPVKALTYLLTHGTVGLTMGSLWRYAALVPPEYWHFWNNLQARATGAIGYVLTSSFLIRENILALITVNIHA SLSYMFASIGINTIPSMSFIYTLFGTLVVINSGFSVFILHMLHAVILTRLGMRHLLRVPAWFDRALIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26180			unknown protein		Lus10031917 [exp]	0	1
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	4.0	0.7728
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	4.6	0.7926
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	5.5	0.7930
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	6.3	0.7900
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	6.7	0.7689
AT2G30695			unknown protein		Lus10004791 [exp]	9.9	0.7668
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10043429 [exp]	12.6	0.7509
AT1G56310			Polynucleotidyl transferase, r...		Lus10031404 [exp]	13.1	0.7522
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	13.1	0.7929
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	13.3	0.7536

Compare expression of checked genes

Lus10031917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.