Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25570 469 / 6e-167 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 457 / 8e-162 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 449 / 9e-159 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 273 / 1e-89 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035083 [exp] 724 / 0 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 639 / 0 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10000156 [exp] 638 / 0 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 634 / 0 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 384 / 2e-132 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 262 / 2e-85 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 252 / 2e-81 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133900 [exp] 535 / 0 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.017G108800 [exp] 485 / 7e-173 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 476 / 1e-169 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.018G101500 [exp] 360 / 4e-123 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 266 / 6e-87 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 266 / 7e-87 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10031919 pacid=23161109 polypeptide=Lus10031919 locus=Lus10031919.g ID=Lus10031919.BGIv1.0 annot-version=v1.0 ATGGCACTTTCTGCAATTGGATTTGAAGGATATGAGAAGAGGCTGGAAATAGCCTTCTTCGAGCCGGGTATCTTTGCTGATCCCGAGGGCAAGGGCCTAC GATCTCTGTCGAAGTCTCAATTGGATGAGATTCTCACTCCAGCTCAGTGCACTATTGTCGACTCACTAGCGAATGAGCATGTGGACTCCTATGTTCTCTC TGAGTCCAGCCTTTTTGTGTACTCATACAAGATCATCATCAAGACATGTGGAACGACCAAGCTTCTCCTGTCGATTCCACCAATTCTAAAATTTGCTGAA ACCCTTTCTCTTAAGGTGAAGTCAGTGAGGTACTCTCGTGGGAGCTTTATCTGTCCCTCAGCACAGCTATACCCTCACCGCAGCTTCTCTGAGGAAGTCT GCGTACTTGATGGCTACTTCGGCAAGCTCGGCACTGAAAGCAAGGCCTATGTCATGGGCGGATGGGATGAACAGCAGAAGTGGCACGTCTACTCTGCATC TGCCGAGACTGCTATGGTTGATGAGCCAATCTACACTGTGGAGATGTGCATGACTGGTCTGGACAGGGAAAAGGCTGCAGTGTTCTTTAAGACCCAGTCT CCTACTGGTTGTGCGATGACAGCCAACTCTGGCATAAGGAAGATTCTCCCAGACTCTGAAATTTGTGATTTTGACTTTGATCCTTGTGGCTACTCTATGA ATGCTATTGAAGGTGATGCTGTGTCGACTATCCATGTGACTCCTGAAGATGGGTTCAGCTATGCTAGCTTTGAAATGATGGGATACAACCCCAAGGAAGT GGATCTGAACGGAGTGGTGAAAAGGGTTCTGGATTGCTTCAAGCCAAGTGAGTTCTCTGTGGCGGTGCACGCCAATGTCGCTGGTATGAAAGAGGTGGAG CAAGCATGCTCCCTGAATGTGAAGGGATACAGTCGCGGAGAGAGGAGCCGTGAGGAGCTTGGAATGGGTGGGTCCATTGTCTACCAGAAGTTTGATGCTT CTTCGGTGGATGGTTCTGGCTCTCCTAGGTCAACTCTGAAGGGCTGCTGCTTCAAAGAGGAGGACGAGGAAGTTTAA
AA sequence Show only first row Show all	>Lus10031919 pacid=23161109 polypeptide=Lus10031919 locus=Lus10031919.g ID=Lus10031919.BGIv1.0 annot-version=v1.0 MALSAIGFEGYEKRLEIAFFEPGIFADPEGKGLRSLSKSQLDEILTPAQCTIVDSLANEHVDSYVLSESSLFVYSYKIIIKTCGTTKLLLSIPPILKFAE TLSLKVKSVRYSRGSFICPSAQLYPHRSFSEEVCVLDGYFGKLGTESKAYVMGGWDEQQKWHVYSASAETAMVDEPIYTVEMCMTGLDREKAAVFFKTQS PTGCAMTANSGIRKILPDSEICDFDFDPCGYSMNAIEGDAVSTIHVTPEDGFSYASFEMMGYNPKEVDLNGVVKRVLDCFKPSEFSVAVHANVAGMKEVE QACSLNVKGYSRGERSREELGMGGSIVYQKFDASSVDGSGSPRSTLKGCCFKEEDEEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	0	1
AT3G25570			Adenosylmethionine decarboxyla...		Lus10035083 [exp]	1.0	0.9626
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	5.7	0.9271
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	7.7	0.8749
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	8.3	0.9270
AT1G76070			unknown protein		Lus10005623 [exp]	8.5	0.9154
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	8.9	0.9106
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	8.9	0.9122
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	12.2	0.9020
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	14.7	0.8983
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	16.6	0.8718

Compare expression of checked genes

Lus10031919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.