Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 145 / 1e-45 unknown protein AT1G23150 139 / 4e-43 unknown protein AT5G37730 90 / 3e-23 unknown protein AT4G22758 45 / 2e-06 unknown protein AT2G01554 39 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035084 [exp] 206 / 2e-69 AT1G70780 171 / 7e-56 unknown protein Lus10034416 [exp] 175 / 3e-57 AT1G70780 168 / 8e-55 unknown protein Lus10019143 [exp] 175 / 4e-57 AT1G70780 167 / 4e-54 unknown protein Lus10027525 [exp] 92 / 2e-24 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 92 / 2e-24 AT1G70780 104 / 4e-29 unknown protein Lus10017628 [exp] 87 / 2e-22 AT5G37730 102 / 3e-28 unknown protein Lus10009131 [exp] 70 / 1e-15 AT1G70780 92 / 1e-24 unknown protein Lus10033584 [exp] 57 / 2e-11 AT5G37730 78 / 2e-19 unknown protein Lus10020544 [exp] 47 / 5e-07 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131600 [exp] 162 / 3e-52 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 154 / 3e-49 AT1G70780 188 / 9e-63 unknown protein Potri.004G089700 [exp] 100 / 2e-27 AT5G37730 108 / 1e-30 unknown protein Potri.017G125300 [exp] 99 / 2e-27 AT1G70780 109 / 2e-31 unknown protein Potri.004G188600 [exp] 47 / 4e-07 AT2G27830 160 / 5e-50 unknown protein Potri.003G116200 [exp] 43 / 2e-05 AT4G22758 131 / 5e-37 unknown protein Potri.009G149200 [exp] 43 / 2e-05 AT2G27830 183 / 6e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031920 pacid=23161317 polypeptide=Lus10031920 locus=Lus10031920.g ID=Lus10031920.BGIv1.0 annot-version=v1.0 ATGTTGCTTTCAAAGGCTAAGAAGAGCCAGGGTGGCTCTAACAAGGGAGGCAATCGGCTGCTGATCAGCGTGACCGTTCTAGGAAGCGCTGGGCCGATTC GGTTCGTGGTGAGCGAGCAGGAGCTTGTGGCTGCTGTTATTGATACCTCGCTGAAATCTTACGCTCGTGAAGGTCGGCTTCCAGTGCTTGGTTCCGATCT CAATGATTTCTTCCTCTACTGCCCAAGCGCAGGCTCTGGAGCTTTGAGCCCCTGGGAAACAATTGGATCAATCGGCTGCCGAAGCTTCATGATGTGCAAG AAGTCAGCAGCAATGAAGATGGCCGATGAAGGAGAAACGTCGCCTCCAACGACGGCAGCAGCTGGAGCAGCTGGTCAGAAAGGGAGTGGAAGCTGGAAGA CATGGATCAACAAGTCTTTCAATCTCAAGATATCTTCTCATTAA
AA sequence Show only first row Show all	>Lus10031920 pacid=23161317 polypeptide=Lus10031920 locus=Lus10031920.g ID=Lus10031920.BGIv1.0 annot-version=v1.0 MLLSKAKKSQGGSNKGGNRLLISVTVLGSAGPIRFVVSEQELVAAVIDTSLKSYAREGRLPVLGSDLNDFFLYCPSAGSGALSPWETIGSIGCRSFMMCK KSAAMKMADEGETSPPTTAAAGAAGQKGSGSWKTWINKSFNLKISSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10031920 [exp]	0	1
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	2.0	0.8612
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	3.2	0.8422
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	4.2	0.8119
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	10.7	0.7780
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	12.8	0.8042
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	13.7	0.8311
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	14.0	0.8044
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	14.1	0.8132
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	14.7	0.8319
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	14.7	0.8085

Compare expression of checked genes

Lus10031920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.