Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47760 505 / 1e-178 AtALG3, ALG3 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035085 [exp] 467 / 2e-165 AT2G47760 347 / 8e-119 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131600 [exp] 548 / 0 AT2G47760 548 / 0.0 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF05208 [flax] [poplar] ALG3 ALG3 protein
Representative CDS sequence Show only first row Show all	>Lus10031921 pacid=23161293 polypeptide=Lus10031921 locus=Lus10031921.g ID=Lus10031921.BGIv1.0 annot-version=v1.0 ATGAGGAAAATCAAGCCCGTCCGCCCGGAATCCCAATCTTCTACTGCTGCATTCTTCAAGAATCCCAAAGTCGTTGTGGCTGTCGCTTTGCTCCTCTTTG ATGCTGTCCTCACTGCTCTCATCATCGCCTATGTTCCATATACGAAGATTGATTGGGATGCCTACATGTCCCAGGTCACTGGGTTTCTTGAAGGAGAAAG GGATTACAGCCAGTTGAAAGGGGACACTGGGCCGCTGGTTTACCCTGCTGGCTTTCTTTATGTTTATTCTGCTATTCAGTATGTCACTGGGGGAGAGGTC ATTGCTGCTCAGATATTGTTTGGCGTTTTGTACGTGGTAAACCTGGCAATTGTCTTATTCATCTATGTGAAAGCAGATGTGCTCCCATGGTGGGCACTTG TGTTGCTTTCTCTCTCGAAAAGGGTGCATTCTATCTTCGTTCTTCGGCTCTTCAATGATTGTTTTGCAATGACACTGTTGCATGCTTCAATGGCTTTCTT TCTTAACCAACAGTGGCATCTTGGACTGATCCTTTTCAGTGGTGCTGTTTCTATAAAGATGAATGTTTTGCTCTATGCTCCTCCTTTGCTACTCCTTATG TTGAAGGCAATGGATCTCCGTGGGGTGATCTCTGCTTTAGCTGGTGCTGCGTTAGTACAGATTCTGTTGGGCCTTCCATTTTTACTTTCATATCCCGTTG CCTATATATCAAGGGCTTTCAATCTTGGGCGCGTCTTCATCCATTTTTGGTCTGTAAACTTCAAATTCATCCCTGAACCAATCTTTGTGTCAAAGCAATT TGCGGTCTCTTTGCTGACTGTTCACCTTGTATTACTCGCTGTTTTTGCTCACCGCAGATGGTGCAAGTTTGAAGGAGGGCTGATGAGATTTCTGCGTGCT AGAGTTTTTTCTTTCCCCGCCATAAAGAGTAGTAGTCCATGGAAGAAGATAAAGGAAGAACATATTCTAACAACTATGTTTGTTGGCAACTTCATCGGAG TCTTATGTGCACGCTCCTTGCATTATCAGTTCTATTCCTGGTACTTCTTCAGCATCCCTCATCTGCTATGGACGACAAGGTTTCCGTCACTAGTACGCTT GATGTTGTTCATAGGCGTGGAGCTATGCTGGAATATTTATCCATCCACTGCTTATTCATCGGCTCTGCTGTTGGGTCTCCATTTGATAATGCTATGGGGA CTATGGTCTGCTCCTCCCCAGTATTACAAAGAGGAGAAAGCATCAACGCCAGAGAAAGACAAGTGA
AA sequence Show only first row Show all	>Lus10031921 pacid=23161293 polypeptide=Lus10031921 locus=Lus10031921.g ID=Lus10031921.BGIv1.0 annot-version=v1.0 MRKIKPVRPESQSSTAAFFKNPKVVVAVALLLFDAVLTALIIAYVPYTKIDWDAYMSQVTGFLEGERDYSQLKGDTGPLVYPAGFLYVYSAIQYVTGGEV IAAQILFGVLYVVNLAIVLFIYVKADVLPWWALVLLSLSKRVHSIFVLRLFNDCFAMTLLHASMAFFLNQQWHLGLILFSGAVSIKMNVLLYAPPLLLLM LKAMDLRGVISALAGAALVQILLGLPFLLSYPVAYISRAFNLGRVFIHFWSVNFKFIPEPIFVSKQFAVSLLTVHLVLLAVFAHRRWCKFEGGLMRFLRA RVFSFPAIKSSSPWKKIKEEHILTTMFVGNFIGVLCARSLHYQFYSWYFFSIPHLLWTTRFPSLVRLMLFIGVELCWNIYPSTAYSSALLLGLHLIMLWG LWSAPPQYYKEEKASTPEKDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10031921 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	6.6	0.8723
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	9.2	0.8206
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	11.1	0.8651
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	13.0	0.7903
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	14.5	0.8554
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	16.9	0.8520
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	17.3	0.8378
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	21.2	0.8418
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	21.6	0.8397
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	23.7	0.8506

Compare expression of checked genes

Lus10031921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.