Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 262 / 1e-89 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 258 / 4e-88 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 239 / 7e-81 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 206 / 1e-67 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 42 / 0.0002 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035086 [exp] 379 / 1e-135 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 334 / 9e-118 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 307 / 2e-107 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 298 / 1e-103 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 283 / 1e-97 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 226 / 4e-75 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 225 / 1e-74 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 209 / 2e-69 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 281 / 6e-97 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 275 / 2e-94 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 248 / 9e-84 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 122 / 5e-34 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 112 / 5e-30 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 43 / 5e-05 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10031922 pacid=23161229 polypeptide=Lus10031922 locus=Lus10031922.g ID=Lus10031922.BGIv1.0 annot-version=v1.0 ATGGCCAACACCAACCAATTCCCATCACCACACAAGGTGGAAGAGGAAGATGAGCAATTCGACTACGCCAAGAGAGCGCAATGGCTCCGGGCAGCAGTTC TCGGAGCTAACGATGGCTTGGTCTCCACAGCATCCCTCATGATGGGCGTGGGAGCTGTGAAACAGGACGTCAAGGCCATGATTCTGACGGGATTCGCTGG CCTTGTGGCCGGGGCATGTAGCATGGCCATAGGCGAGTTTGTGTCAGTCTATTCACAGTACGACATAGAGGTGGCTCAAATGAAACGGGACAGGGAGAGG AGTCCTACCCCCGCGAGGATTGAGGAAGAGGCGGAGGAAGAGAAGGAGAGCTTGCCGAATCCAGTACAAGCAGCGGCTGCTTCGGGTTTGGCTTTCTCGA TCGGCGCAATGGTGCCGTTGTTGGCTGCCTCTTTCATCAAGGACTATAAGGTGAGGCTTGGGGTGATGTTTGGAGCAGTGACCTTGGCTTTGGTCATGTT TGGATGGATTGGAGCTGTTTTAGGAAAGGCTCCTGTGGTTAAGTCATCTATGAGGGTTTTGATTGGTGGGTGGGTGGCTATGGCTCTCACTTTTGCTTTG ACTAAATCGGTTGACTCATTCCCTATGGATTTGATTTAA
AA sequence Show only first row Show all	>Lus10031922 pacid=23161229 polypeptide=Lus10031922 locus=Lus10031922.g ID=Lus10031922.BGIv1.0 annot-version=v1.0 MANTNQFPSPHKVEEEDEQFDYAKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDVKAMILTGFAGLVAGACSMAIGEFVSVYSQYDIEVAQMKRDRER SPTPARIEEEAEEEKESLPNPVQAAAASGLAFSIGAMVPLLAASFIKDYKVRLGVMFGAVTLALVMFGWIGAVLGKAPVVKSSMRVLIGGWVAMALTFAL TKSVDSFPMDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031922 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	4.0	0.7941
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	5.5	0.7570
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	6.7	0.7608
AT2G01890		PAP8, ATPAP8	purple acid phosphatase 8 (.1....		Lus10019133 [exp]	7.7	0.7296
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	12.6	0.7767
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	17.7	0.7386
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	20.4	0.7287
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	20.6	0.7662
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	21.2	0.7179
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	21.6	0.7763

Compare expression of checked genes

Lus10031922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.