Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18420 238 / 7e-77 Protein prenylyltransferase superfamily protein (.1) AT4G39470 114 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 108 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37400 108 / 7e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53560 106 / 4e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 80 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035087 [exp] 188 / 8e-60 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1) Lus10024433 [exp] 108 / 6e-27 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 105 / 3e-25 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035707 [exp] 82 / 1e-17 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143600 [exp] 246 / 1e-79 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.010G098500 [exp] 223 / 1e-70 AT3G18420 328 / 5e-112 Protein prenylyltransferase superfamily protein (.1) Potri.008G142980 [exp] 162 / 3e-49 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.007G079200 [exp] 125 / 4e-33 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 116 / 9e-30 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 109 / 3e-27 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 106 / 2e-26 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G081200 [exp] 56 / 5e-10 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031923 pacid=23161148 polypeptide=Lus10031923 locus=Lus10031923.g ID=Lus10031923.BGIv1.0 annot-version=v1.0 ATGAATTCCACTACTCTCCCCACCTCCTTCCTCCATCTCCATACCCCCTCTTCATCTTCTTCCTCCTCCTCCAATTCAACTTCTCAGCTCGCCAACCTTC CTCCTAATTCCATCAAAGCAAGTTCACCAACCCCACAACCACCCCTCTTCATCCACCGCCTCAAATCCTTCGCCAAAACCGCCGTCTTGATCGCCGCCTC CGCTTCTGCCGCCGCACATTTCTCCATTCTCCAGCCGGCCAAGGCCGAAACCTCTCCAGTAACAACTCTAGCCCAAGAAACAACAACTCAATCCGTGGAA GAAGAAGATGATGAACAACAAGAATTCAATTCTCTGTCCTCCCCGTTGTCCAAGTTCCTCGACGGAAATCCCGAAGCTTCCGACTCCGTGAAAGCACTGC TGCAGCATAAGCTCCTAAGCGGAGAAGAAGGAGAGGATGCTCTCAAGATTCTGAACCGCCTGGTCTCGGCGCAGCCCTCGGTAACGGAATGGAAGTTCTT ACTCGCCCGGGCTTACGCGCAAATGGGCCAGAACAACAATGCACGCAAGGTGTTCGAAGAAATTCTAGCTGTGGAACCCTTGTCTTTCGAGGCGTTGTCG GAGATCGCGCTAATGATGGTCAAGTGCGGGGAAGGGGAAGATGCGATTTCGAGACTGGAGAGCGCGTTGCAGATTGCAGAAGAAGAGGAAAAAGTGAAGG AAGGTCGTGAGGTGAGGATGATAATGGCGCAGGTCTATTTCTTGCAGAAGAATATGGAGGAGGCGTTGAAGATATACCATGAGCTTTCGAAGGAGGATCC TCTGGATGTTAGGCCTTATTACTGCAAGGGGATCATATACCGTATGCTTAACAAGAACGAGGAAGCGAAACGGGAGATTGCAAAGTATCGAGAGCTGTCG CCTAAGAAAGGTGAGGTTGATGATGATTACTCAAGGGCTGCATTGTCCGGAACGACTACAGGGTTCGAATGGAATGACCACAACTAA
AA sequence Show only first row Show all	>Lus10031923 pacid=23161148 polypeptide=Lus10031923 locus=Lus10031923.g ID=Lus10031923.BGIv1.0 annot-version=v1.0 MNSTTLPTSFLHLHTPSSSSSSSSNSTSQLANLPPNSIKASSPTPQPPLFIHRLKSFAKTAVLIAASASAAAHFSILQPAKAETSPVTTLAQETTTQSVE EEDDEQQEFNSLSSPLSKFLDGNPEASDSVKALLQHKLLSGEEGEDALKILNRLVSAQPSVTEWKFLLARAYAQMGQNNNARKVFEEILAVEPLSFEALS EIALMMVKCGEGEDAISRLESALQIAEEEEKVKEGREVRMIMAQVYFLQKNMEEALKIYHELSKEDPLDVRPYYCKGIIYRMLNKNEEAKREIAKYRELS PKKGEVDDDYSRAALSGTTTGFEWNDHN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	0	1
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10016757 [exp]	1.7	0.9000
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	2.4	0.9153
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	3.3	0.9168
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	7.4	0.8841
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	7.5	0.8303
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	8.1	0.8835
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	13.4	0.8853
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	15.9	0.8533
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	16.4	0.8576
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	16.9	0.8539

Compare expression of checked genes

Lus10031923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.