Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37870 125 / 2e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G53980 83 / 6e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT5G05960 77 / 2e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G48130 44 / 1e-05 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22600 39 / 0.0004 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G13900 39 / 0.0004 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G03103 38 / 0.001 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004677 [exp] 76 / 5e-18 AT5G05960 142 / 8e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10009872 [exp] 73 / 8e-17 AT5G05960 148 / 2e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10000397 [exp] 72 / 2e-16 AT5G05960 138 / 3e-43 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10014681 [exp] 44 / 2e-05 AT3G22600 126 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10041196 [exp] 40 / 0.0002 AT1G05450 122 / 5e-35 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10021911 [exp] 40 / 0.0002 AT1G05450 121 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141000 [exp] 137 / 6e-42 AT2G37870 121 / 2e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G100600 [exp] 135 / 2e-41 AT2G37870 122 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G196300 [exp] 82 / 3e-20 AT5G05960 150 / 2e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G061800 [exp] 77 / 2e-18 AT5G05960 155 / 3e-50 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G104300 [exp] 74 / 3e-17 AT3G53980 143 / 2e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.013G131500 [exp] 43 / 2e-05 AT5G13900 122 / 2e-36 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.004G196000 [exp] 42 / 5e-05 AT3G43720 94 / 1e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.010G085400 [exp] 39 / 0.0006 AT3G22600 140 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155100 [exp] 39 / 0.0008 AT3G22600 149 / 2e-46 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10031925 pacid=23161313 polypeptide=Lus10031925 locus=Lus10031925.g ID=Lus10031925.BGIv1.0 annot-version=v1.0 ATGGCGACTAGAGCTGGTCATTGGCTCGTCGCAGCCGCAGTAATCACTCTTCTCCTGCTTTCGAACGTCAACACTAACACCGTCATGACTGCTGAAGCAG CCGGCAAGAGAGGCGGCGGAGGAGGCGGCTCTGCATGTGGCAAGACACCAATTAGCTCGGCGGCGGCTAGTCTGAGCCCCTGCTTGGGCGCCGCAAAGAG CCCAAGGGCCCCCGTGCCGCCCGCGTGCTGCTCCAAGGTCGGAGGACTGATCAAGGCGGCTCCAAAGTGCCTTTGCGCAGTTCTGTTGTCCCCGTTGGCG AAGCAGGCTGGAATCCAGCCTGGGATTGCGATCACCATCCCCAAACGCTGCAACATCCGCAATCGCCCCGCCGGAAAGAAGTGTGGAGTTTTTCCGGATG AGCAGTTGAGTCAGGAGATGGAGATCATGACTGAGCGAGCAGAAGTAAGAGTGGGTTGTCAAAAGGAGAGAGGGAGGGCATGGTCAGCAGAGAGTGATCA ATCAGAGCATGGTGTGGGAATATGA
AA sequence Show only first row Show all	>Lus10031925 pacid=23161313 polypeptide=Lus10031925 locus=Lus10031925.g ID=Lus10031925.BGIv1.0 annot-version=v1.0 MATRAGHWLVAAAVITLLLLSNVNTNTVMTAEAAGKRGGGGGGSACGKTPISSAAASLSPCLGAAKSPRAPVPPACCSKVGGLIKAAPKCLCAVLLSPLA KQAGIQPGIAITIPKRCNIRNRPAGKKCGVFPDEQLSQEMEIMTERAEVRVGCQKERGRAWSAESDQSEHGVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	0	1
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	1.0	0.9777
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	2.4	0.9777
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	2.8	0.9677
					Lus10041251 [exp]	3.5	0.9742
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	4.5	0.9672
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	7.9	0.9197
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	8.1	0.9591
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	8.9	0.9523
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000851 [exp]	9.4	0.9520
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	9.8	0.9502

Compare expression of checked genes

Lus10031925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.