Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02148 484 / 8e-170 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035090 [exp] 867 / 0 AT2G02148 487 / 3e-171 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143700 [exp] 607 / 0 AT2G02148 516 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031926 pacid=23161234 polypeptide=Lus10031926 locus=Lus10031926.g ID=Lus10031926.BGIv1.0 annot-version=v1.0 ATGGGGAGTAGGGTTCCAGTACAGCACTATGACTTGAGATCCCCTCCCACTGCTAATTCGTTCATCGGAAGCTCTCTTCACGACCTCAACACTGTCGATT CTCGACCCCACGCTACTATTGAACGCATCGCCGAAGTTGATCGTCATCACCCTGCTTCCTCCGATACTGGCCTCGATACTGAGGACGACCCTCGTGGCGC TTCTGTTGATTGTATGCACGAGTCTTACAGAGATCCTTTACAACTTCATGGCGTGGGAGTTGAAGACGATCGGTCTAGCATAGAGAACAGTGGGTCTTCA AGGGTTACCTACAATTTGTTGAACATAGAGGATGTTTCACCCATTGAATCTGCTCGAGCTAGATTTCTGCAAATTATTGTGGATTACTTCATCTGCGATC ATGTAATTGAGGTGATGGATAGTGAGAACAATTATTCTGATCAAACTGGACAAGATAGTGTAAGCAAGAGGAAGCCTGGAGAAGTTCGATATGAAGGGGA TCCGAGGTTTGCTTTGCCCTTGATGTATGTCGCCAATATGTATGAAACGCTAGCGAATGATGTAAATCAAAGACTGGTTTCCATGAATGGTATTCGTGAT AAGACCATTGGGGTAGCTCTTGAAGCAGCTGGTGGTTTGTACAGAAGAATGGCCAAGAAATTTCCAAAGACAGGTCCGTGTATGTTTAAAAGAAGAGAAC TGGCTACTTCCGTAGAGACAAAGACGAGATTTCCAGAGTTAGTGATCCAAGAAGAGAAAAGAGTACGGTTTGTGGTCGTCAATGGTTTGGACATTGTTGA GAAGCCAACTAATTTGCCGATAGAGGATGCAGAATGGTTCACGAGACTTACTGGTCGGAGTGAAGTTGCGGTCTCTCCTCAGGACTATAAATACTACTCT CCAAGGCACAAGTACAGGCGTATCACAACCAACGTCCCTGGATTCTCGACAATTCCAGGGACGGATGGGTCATCTACAATGGTCGCTGATCAAGGGTTCC GCTCGCCGCAAAGTCAAGAGCAGACGCCTCCGAAGCATCATATTGTACCTCACATAACACACCAGCCACAATTTCATCCAGTAGTTCCCCACGTCCATCA GAATCAACACTTCTCCCAGAATCATCAATGTGGGCCCCCTGCAGTTCACATACCAGAGATGCCACATCAGAACCAGTCTCCTTCCATTTCCCAACACATG GCTTACTTACAGCCCCTTGCAGGAAACCATCTGGGTGGCCGTCTGCATATAATGCCCAGTAGCCCTGCAAAGTTCTGTGACGAATGTGGGACTCCATATT TGAGAGAAACATCAAAGTTCTGCTCTGAATGTGGCACGAAGAGGCTGGGAATATGA
AA sequence Show only first row Show all	>Lus10031926 pacid=23161234 polypeptide=Lus10031926 locus=Lus10031926.g ID=Lus10031926.BGIv1.0 annot-version=v1.0 MGSRVPVQHYDLRSPPTANSFIGSSLHDLNTVDSRPHATIERIAEVDRHHPASSDTGLDTEDDPRGASVDCMHESYRDPLQLHGVGVEDDRSSIENSGSS RVTYNLLNIEDVSPIESARARFLQIIVDYFICDHVIEVMDSENNYSDQTGQDSVSKRKPGEVRYEGDPRFALPLMYVANMYETLANDVNQRLVSMNGIRD KTIGVALEAAGGLYRRMAKKFPKTGPCMFKRRELATSVETKTRFPELVIQEEKRVRFVVVNGLDIVEKPTNLPIEDAEWFTRLTGRSEVAVSPQDYKYYS PRHKYRRITTNVPGFSTIPGTDGSSTMVADQGFRSPQSQEQTPPKHHIVPHITHQPQFHPVVPHVHQNQHFSQNHQCGPPAVHIPEMPHQNQSPSISQHM AYLQPLAGNHLGGRLHIMPSSPAKFCDECGTPYLRETSKFCSECGTKRLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02148			unknown protein		Lus10031926 [exp]	0	1
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	3.9	0.7634
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	5.7	0.7102
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	8.5	0.7542
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	10.1	0.7319
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	10.4	0.7492
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	11.7	0.7595
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	13.0	0.7287
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	13.3	0.6755
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036128 [exp]	15.2	0.6745
AT2G30120			unknown protein		Lus10042267 [exp]	15.9	0.6991

Compare expression of checked genes

Lus10031926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.