Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 368 / 2e-127 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 350 / 7e-121 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 354 / 4e-118 unknown protein AT4G15970 301 / 1e-101 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 194 / 6e-61 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28700 192 / 9e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 188 / 3e-58 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 164 / 1e-48 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G56550 51 / 3e-07 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019139 [exp] 483 / 7e-174 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 477 / 3e-171 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 335 / 1e-114 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 335 / 2e-114 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 285 / 5e-95 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 270 / 3e-89 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 268 / 1e-88 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 267 / 4e-88 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017982 [exp] 197 / 3e-60 AT1G14590 200 / 4e-60 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142200 [exp] 424 / 3e-150 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 414 / 1e-145 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 369 / 1e-128 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 362 / 5e-126 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 216 / 7e-69 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 213 / 2e-67 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 213 / 4e-67 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 212 / 1e-66 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 54 / 3e-08 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 45 / 4e-05 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10031927 pacid=23161158 polypeptide=Lus10031927 locus=Lus10031927.g ID=Lus10031927.BGIv1.0 annot-version=v1.0 ATGGGAGACAGCAAAACTGTGATTCTGACGACGTTGAATGAAGCATGGGCGGCACCAGGCTCGGTGTTCGAGCTCTTCCTCCGGAGCTTCCGAACTGGAA TCCGCACACGTAGATTTTTGAGCCACTTGGTCGTCATAGCACTGGATGAGAAAGCCTATCGCCGGTGTAAAGAATTGCACAACAATTGCTATGCTCTTGT GACAGAGGGCGTTGATTTTCGGCGTGAGGCGTATTTCATGACTCCGGTTTACCTGAAGATGATGTGGAGACGAATTGACTTCTTACGTACTGTTCTTGAA CTAGGTTATAACTTCATCTTCACGGATACAGATGTCTTGTGGTTTAGGAATCCATTTCCACGGTTTTATCCAGATGCGGACTTTCAAATTGCTTGTGATG TATACTCGGGGAGTAGTGTTGACTTGGGGAACATAGTCAATGGAGGATTTAGCTATGTGAAGGCCAATAATCGTTCAATAGAGTTTTACAAGTTCTGGCA CTCTTCACAGTATACGTATCCTGGTTATCATGACCAGGATGTGCTCAACTTTATCAAGAAAGATGATTATGTGAAGGAGCTTGGGTTGCAGATGAGATTT CTGGACACTGCTTATTTCGGTGGACTTTGTGAACAGAGTAAAGATTTTAATTTAGTTTGCACCATGCATGTGAATTGCTGTGTGGGTTTGGATAACAAGG TTAACGATCTTGGAGTTATGCTCGATGACTGGAGAAACTTTTTAAGCTTACCGTCGAAGCTGAAAAGAGCTTTACGCATCTCATGGAGAGTACCTCAGAA GTGCAAGTGA
AA sequence Show only first row Show all	>Lus10031927 pacid=23161158 polypeptide=Lus10031927 locus=Lus10031927.g ID=Lus10031927.BGIv1.0 annot-version=v1.0 MGDSKTVILTTLNEAWAAPGSVFELFLRSFRTGIRTRRFLSHLVVIALDEKAYRRCKELHNNCYALVTEGVDFRREAYFMTPVYLKMMWRRIDFLRTVLE LGYNFIFTDTDVLWFRNPFPRFYPDADFQIACDVYSGSSVDLGNIVNGGFSYVKANNRSIEFYKFWHSSQYTYPGYHDQDVLNFIKKDDYVKELGLQMRF LDTAYFGGLCEQSKDFNLVCTMHVNCCVGLDNKVNDLGVMLDDWRNFLSLPSKLKRALRISWRVPQKCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10031927 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	12.3	0.6906
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	20.8	0.5987
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	33.4	0.5906
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	66.9	0.4839
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	72.2	0.5343
AT4G27290			S-locus lectin protein kinase ...		Lus10005052 [exp]	178.4	0.4817

Compare expression of checked genes

Lus10031927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.