Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14580 242 / 4e-74 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 243 / 7e-74 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT2G02070 237 / 1e-70 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1) AT1G55110 226 / 4e-68 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 221 / 2e-65 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT3G45260 218 / 3e-65 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G50700 214 / 1e-63 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G03150 213 / 2e-62 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G03840 213 / 2e-62 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 207 / 1e-60 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035092 [exp] 427 / 3e-144 AT2G02070 334 / 3e-107 indeterminate(ID)-domain 5 (.1) Lus10008396 [exp] 236 / 8e-71 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 232 / 3e-69 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 217 / 5e-64 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10007409 [exp] 215 / 1e-63 AT3G45260 308 / 4e-100 C2H2-like zinc finger protein (.1) Lus10036116 [exp] 214 / 4e-63 AT5G03150 307 / 8e-100 JACKDAW, C2H2-like zinc finger protein (.1) Lus10010820 [exp] 207 / 1e-62 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 213 / 3e-62 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 209 / 2e-61 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142400 [exp] 269 / 2e-82 AT2G02070 409 / 2e-135 indeterminate(ID)-domain 5 (.1) Potri.010G099200 [exp] 266 / 1e-81 AT2G02070 384 / 4e-126 indeterminate(ID)-domain 5 (.1) Potri.010G099100 [exp] 261 / 3e-80 AT2G02070 369 / 4e-121 indeterminate(ID)-domain 5 (.1) Potri.008G142500 [exp] 252 / 6e-77 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.003G036900 [exp] 223 / 6e-66 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.006G129300 [exp] 217 / 6e-64 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.002G048000 [exp] 216 / 6e-64 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.017G017100 [exp] 216 / 7e-64 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.013G019200 [exp] 216 / 8e-64 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 217 / 1e-63 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031928 pacid=23161118 polypeptide=Lus10031928 locus=Lus10031928.g ID=Lus10031928.BGIv1.0 annot-version=v1.0 ATGGCGACTTCTTCATCATCATCGGTTCCCTTCTTCGGAATGAGCAGAGAAGAATTGGATCAGAATCTACAGCAGCAGATGAAACAACAATCGGCCGCAG GAGGCGGCGGCGGGGGTGGTGGAGTGATTCCAAATCACCACCACCACCTTCAAAGCCTCTTCCACCATTCATCCTCTCCTTTCTTAACCAACAATAATTC ATCTCCTTCTCCTTCTTCTTCTTCACTTCTCACCGGAGTAGCTCAACAGCTTCACCATCAGCATCAGCCACCGCCGACTCATCTCCCCGCCGCCAACAGC TCCTCCGCCGCCACCCAGCCCCCTCCCAAGAAGAAACGCAATCAGCCTGGAAATCCAAGCAAATCCGGACGCGGAAGTGATTGCTTTGTCACCAAAGACG CTGATGGCGACCAACAGGTTCATATGCGAGCAAAAGAACAACAAGGCAGTAGTGAAGCACAAAGCAACAAGGAAGTCGTGAAGCGCAAAGTGTATCTTTG CCCCGAACCGACTTGCGTCCACCACGACCCTTCTAGGGCGCTCGGTGACTTGACCGGGATCAAGAAGCACTACTATCGTAAGCACGGTGAGAAGAAGTGG AAGTGCGACAAGTGCTCTAAGCGTTACGCTGTCCAGTCCGACTGGAAGGCCCATTCGAAGACTTGCGGCACCCGCGAGTACCGCTGCGATTGCGGCACCC TCTTCTCCAGGAGGGACAGTTTCATCACTCATCGGGCATTTTGCGACGCGCTTGCTCAAGAGAGCGCGAGGAACCCTCCTCCTCCTTCCCTCTCCTCCAT CGGCTCTCATCTCTATGCCGGCGGTGGAGCAGCCAATAACATGTCCTTAGGCATTTCATCCTCTTCCATCACTCATGACCATACTGCTGCTGACATCCTC AGACTAGGCGGAGGAGGAGGAGGAGGTGGTGGTGGAGGTGGACAGTTTGATCATCTCCTCCCTCCTACTCCTTCACTTGGAGGAGGAGGATCTTCATCGT TCCGGAACCCGCATTTGTCTTCCTCCTCATCGGCTGCTGCTTTCTTCATGCAAGACTCCGACCACGGCGGCCACCACCAGAGTCAGAGCAACTACCAACA GTATCACCATGCTCTCCTGCAGCAGTTTTCAGCTGCGGCTGATCCAAACAACACAGGTGGCAGCGGAGGGAATAATAATCATAATAATAATAACCTCTTC AACCTTGGTTTCCTGCCGAACTCGTCGACCAGCATTGATAGCTTCAACGGCGGAGGAGGAGGGGAAGTCGGAGGGGATCATCATCATAATCAAATGATGG GGTTGGTGGGGTCCAGCAGCAGTACAAGTACTGTGCCTAGTCTGTTCAACTCATCCATTCATAATCATCAGATGAGTAACATGGTGGCGGCGCACATGTC GGCGACGGCCCTTCTCCAAAAAGCAGCTCAGATGGGATCCACCACCAGCTCTAATCCCAACTCCACCACCAGCGCCTCATTGCTCAGGAGCGCATTCGGC GGCGGCGGCGGGCTTTCCAATACCACCAACATCACCGCCCACAATAAAAACAAAAAATCCTCATCCTCGTCCTCACTGTGTGGGTTATAG
AA sequence Show only first row Show all	>Lus10031928 pacid=23161118 polypeptide=Lus10031928 locus=Lus10031928.g ID=Lus10031928.BGIv1.0 annot-version=v1.0 MATSSSSSVPFFGMSREELDQNLQQQMKQQSAAGGGGGGGGVIPNHHHHLQSLFHHSSSPFLTNNNSSPSPSSSSLLTGVAQQLHHQHQPPPTHLPAANS SSAATQPPPKKKRNQPGNPSKSGRGSDCFVTKDADGDQQVHMRAKEQQGSSEAQSNKEVVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKW KCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPPPSLSSIGSHLYAGGGAANNMSLGISSSSITHDHTAADIL RLGGGGGGGGGGGGQFDHLLPPTPSLGGGGSSSFRNPHLSSSSSAAAFFMQDSDHGGHHQSQSNYQQYHHALLQQFSAAADPNNTGGSGGNNNHNNNNLF NLGFLPNSSTSIDSFNGGGGGEVGGDHHHNQMMGLVGSSSSTSTVPSLFNSSIHNHQMSNMVAAHMSATALLQKAAQMGSTTSSNPNSTTSASLLRSAFG GGGGLSNTTNITAHNKNKKSSSSSSLCGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	0	1
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	1.0	0.7803
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	2.0	0.7594
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	3.9	0.6796
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	6.9	0.6379
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	14.0	0.7002
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	16.2	0.6520
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Lus10037107 [exp]	17.3	0.6342
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	20.4	0.6924
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	25.7	0.6275
AT3G21580		ABCI12	ATP-binding cassette I12, coba...		Lus10001117 [exp]	29.1	0.6794

Compare expression of checked genes

Lus10031928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.