Plant FIBer expression Database

Lus10031929 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035092
[exp]
107 / 5e-27 AT2G02070 334 / 3e-107 indeterminate(ID)-domain 5 (.1)
Lus10031928
[exp]
59 / 6e-10 AT2G02080 271 / 2e-84 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10031929 pacid=23161090 polypeptide=Lus10031929 locus=Lus10031929.g ID=Lus10031929.BGIv1.0 annot-version=v1.0
ATGGTGGCGGCGCACATGTCGGCGACGGCCCTTCTCCAAAAAGCAGCTCAGATGGGATCCACCACCAGCTCTAATCCCAACTCCACCACCAGCGCCTCAT
TGCTCAGGAGCGCATTCGGCGGCGGCGGCGGACTTCCCAATACCACCAACATCACCGCCACCAGTAACAACAACAAATCTTCATCCTCGTCCTCCGGTGG
TGGAGAAAAGAACCAGCCTCCGCCGCCATCTCCGGCTCTGGGAGGGTTCGGGAGCTCATTCTTCGGAGACGCCGACGCCAACAACGGCAGCAACAATCTT
CATGACCTGATGAACTCCTTCTCCTCGCCGGGGAATAACAGCTCATCCATCTTCAGCAGCAACAACAACAGCAGCAGCAAGTTATTGAGCGGTACATCAG
CAGGCTCGGACAGGTTGACGAGAGATTTCCTCGGAGTTGGACACGTGGCGGCCTCAAGAGGCATCGCTACAAATTTAACCACCGGGGGCTTCTCCTCGCA
GCCACATCAGCAGCAGCTGCAGCAGCTTGGAGGAGTTGTGGAGCGGAGCTCGTCGTTGGATTCAGAAAGGAATAATAACAATAACAGCAGCATGGGGAGT
CATTCTTCTTTCGGGGGCAACCCTAACTTTCAATGA
AA sequence
>Lus10031929 pacid=23161090 polypeptide=Lus10031929 locus=Lus10031929.g ID=Lus10031929.BGIv1.0 annot-version=v1.0
MVAAHMSATALLQKAAQMGSTTSSNPNSTTSASLLRSAFGGGGGLPNTTNITATSNNNKSSSSSSGGGEKNQPPPPSPALGGFGSSFFGDADANNGSNNL
HDLMNSFSSPGNNSSSIFSSNNNSSSKLLSGTSAGSDRLTRDFLGVGHVAASRGIATNLTTGGFSSQPHQQQLQQLGGVVERSSSLDSERNNNNNSSMGS
HSSFGGNPNFQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G02070 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1... Lus10031929
[exp]
0 1
AT5G09650 ATPPA6 pyrophosphorylase 6 (.1) Lus10037239
[exp]
1.0 0.7823
AT2G02080 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1... Lus10031928
[exp]
2.0 0.7594
AT3G15570 Phototropic-responsive NPH3 fa... Lus10037848
[exp]
2.4 0.7431
AT5G07830 ATGUS2 glucuronidase 2 (.1) Lus10021652
[exp]
8.0 0.7126
AT3G12685 Acid phosphatase/vanadium-depe... Lus10001841
[exp]
9.7 0.7261
Lus10020868
[exp]
14.5 0.7044
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10037926
[exp]
20.5 0.7023
AT1G27340 Galactose oxidase/kelch repeat... Lus10015775
[exp]
22.1 0.6199
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10026328
[exp]
24.7 0.6896
AT5G63380 AMP-dependent synthetase and l... Lus10022335
[exp]
25.8 0.7178

Lus10031929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.