Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75010 535 / 2e-180 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) AT1G60890 78 / 2e-14 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT2G35170 68 / 1e-11 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 66 / 5e-11 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 66 / 1e-10 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G10900 65 / 1e-10 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 64 / 3e-10 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G21920 63 / 4e-10 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77740 64 / 5e-10 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT4G17080 63 / 6e-10 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035091 [exp] 1401 / 0 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10000187 [exp] 520 / 0 AT1G75010 185 / 5e-53 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10020821 [exp] 76 / 1e-13 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 73 / 7e-13 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10029661 [exp] 66 / 1e-10 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008325 [exp] 64 / 3e-10 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10018200 [exp] 64 / 4e-10 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 64 / 5e-10 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10028062 [exp] 63 / 5e-10 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099300 [exp] 747 / 0 AT1G75010 657 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Potri.008G142301 [exp] 77 / 1e-17 AT1G75010 71 / 1e-16 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Potri.003G019100 [exp] 71 / 2e-12 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.005G175800 [exp] 69 / 4e-12 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G088100 [exp] 70 / 6e-12 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 67 / 5e-11 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.005G172800 [exp] 66 / 1e-10 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G085000 [exp] 64 / 3e-10 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G196000 [exp] 64 / 3e-10 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.002G085900 [exp] 63 / 3e-10 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10031930 pacid=23161063 polypeptide=Lus10031930 locus=Lus10031930.g ID=Lus10031930.BGIv1.0 annot-version=v1.0 ATGCAATTCTCCATAATAAGCCCTCTGAAATGGAGCTCTATCTGTTCCAAAGAATGCTTCCCTCCTCAATCTACTTTCACCGTCCCCATCATCTCTTTGC AATCCGTCTCCTCCTACGGTGAATGCCGTGGTTGCTTGAGGTGGCGTCTCGGTAGCTACCCTAGGAGGTCTCGTAGGTTGACCGTGACATCGTCGAACAA ATCTGGGGCTACGAATTGCAGAGAGCGTGCTGCTACTGCTTACCACGACACCGTTAGCCCTCCATTGGTGGAGGTCATTGGCATTGGAAGTAGGAAGGAT GCCGTTCTTCGCTTCTGCTTGGAATCGCCTTTCCAGCTCTCGCAATCCGTCCGGTACTGGAACATTCGTGCAAAAGATCCCTTAAATGTTCAGTTAGAAG AAAGGCTTCTCGAGACAGGTTTCTTTCTTTCTTCATTTCAGTTTATGTGCCCTGTGGCAAGTGGAGGATATGGCTTGGATCACGATGCGGCTGTTAACAT TCTTAAAACGGTCAGATCAAGAAATGGGTTAGCCATTGCTATTGTTCTAAACCCTTTCAGATTTGAAGGAAAAAGGCGGCAAGCCGAGGTGAAAAATTTG ACTCAAAAGCTTCAAGAGCATACAGACTTTTATATTGATATGGCTGCAGATTCGCTGCTAAAAAATGATTCGGTGACTCTCGATGAGGCTCTGAGGACTG CAGATACTGCTGTTTCATTGGCCATAAAGGCGATCTCTTTGTTTGTCTCACCTCAGGAAACGCATAAAAAACTAATTGATGGACCACAGGATAACGTGAA AGGGCTCGAAGTTTCCAGCATTCTGAAAAATCTGGATAATCAGAAAGAAGCAAAAATCGGATTTGGAGTGGCTAACAGCATTAGAGATTCAGTTATGCAG GCCCTTTATGACTGTCCTTTCATTGGCACTGGTATAGAGGATTCAAATGGTATAATATTCTGCATCATTACAAGCTCAGATATTATCAAAGATGAAGATG CGCATGCCACTTTGGACATTTTCCGCCAAGCAGTGAGGTTCACTGGGAAAGTTGTTATAGCTTCTTCTCATGAACCCAATCTCGAGCCAAACATGCTAGT GACAGCAATTATTGTGATGGGTAGACCTGAAACACAGGCTCTTCCCAAGAAAAGCATCTTTTCCACACTGGCGGAGCATTTCCCTTCTATTTTTAAAATT TTTGTGGGAAACCAGCAATTAAAGGCCAATAGACAAATCAACACAGACAATCCCTCTGAAACAATATATTCGCTAGATGCCAGCGCAGAAGGAGATGTGA TTTCCCTGAATGGCATGGCTGATGGAGCTGACACGTGGCACGAGGATGACAATAACACAGTATTTAGTGGACTTGATGACGATTCTGATTTCAGAGATCG AAGTGGAAATGAAGAACTGTTATCAGAGTCTTCTGATTTCAATGACCAAATTGCTGAAGGCAATATTGCTTTCCAAAGGGAATTGCAACGAAATGGGAAC TTGGGTATTGGACATCAGATCGCGGAGAAGTGGGCTAAACAAAGGGCTAGAACTCCTGTTCTTGATAACTTGAGTACCTTTCGCCTTCCAGTTGGCGTGA GGCGTCCAGAAGATATAGGGGACATTCAGGATATCTCATACATTGAAGAGCGCCAAGAACTAAAAGAAGAGAATGCTCTCCCAGAACAACATCGTGAGGA CCCAAGTGTTTCTTCATTAGGTGCCTTCACTGATGCTGGTTTTCTAGCTGTTAAGGACTTCTACAGTTATGCATCTGCCTCGTTCAAGTCTAGAAATGAT GAAGCAGCCAGAAAGCAAGGAGTTCTTTCCGTTCGTGCTGCTTCTGTGCTGGAGTCTGAGCGTGAGTCACCAAGAAAGTGGAGTCCTACAACAGAAATGC AGTACAGAGGCGGAGTTTACAAGGGGCGATGCCAAGGGGGACTTCCTGAAGGAAAGGGCCGTCTTGTCCTTCATGATGGGAGCATATATGACGGAATGTG GCATTATGGGAAAAGATCAGGACTCGGGACTTTTTACTTCAGTAATGGAGATGTCTTCCAGGGTTCATGGAGGGATGATGTTATGCATGGCAAGGGTTGG TTTTATTTCCACATTGGGGATCGATGGTTTGCAAACTTCTGGAAGGGAAAGGCGAATGGTGAAAGCCGATTCTATTCAAAGCAAGGGGATGTCTTTTTTG GCCAGTTTCAAGACGGTTGGCGCCAGGGGGATTTTCTCTGTGTAGATGTTGAAGGAACAAGGTGCATTGAAGTCTGGAACAAGGGACTGCTTGTAAGCCG CAAGCCATTGGATTCTGATAAAGTCGGTTAA
AA sequence Show only first row Show all	>Lus10031930 pacid=23161063 polypeptide=Lus10031930 locus=Lus10031930.g ID=Lus10031930.BGIv1.0 annot-version=v1.0 MQFSIISPLKWSSICSKECFPPQSTFTVPIISLQSVSSYGECRGCLRWRLGSYPRRSRRLTVTSSNKSGATNCRERAATAYHDTVSPPLVEVIGIGSRKD AVLRFCLESPFQLSQSVRYWNIRAKDPLNVQLEERLLETGFFLSSFQFMCPVASGGYGLDHDAAVNILKTVRSRNGLAIAIVLNPFRFEGKRRQAEVKNL TQKLQEHTDFYIDMAADSLLKNDSVTLDEALRTADTAVSLAIKAISLFVSPQETHKKLIDGPQDNVKGLEVSSILKNLDNQKEAKIGFGVANSIRDSVMQ ALYDCPFIGTGIEDSNGIIFCIITSSDIIKDEDAHATLDIFRQAVRFTGKVVIASSHEPNLEPNMLVTAIIVMGRPETQALPKKSIFSTLAEHFPSIFKI FVGNQQLKANRQINTDNPSETIYSLDASAEGDVISLNGMADGADTWHEDDNNTVFSGLDDDSDFRDRSGNEELLSESSDFNDQIAEGNIAFQRELQRNGN LGIGHQIAEKWAKQRARTPVLDNLSTFRLPVGVRRPEDIGDIQDISYIEERQELKEENALPEQHREDPSVSSLGAFTDAGFLAVKDFYSYASASFKSRND EAARKQGVLSVRAASVLESERESPRKWSPTTEMQYRGGVYKGRCQGGLPEGKGRLVLHDGSIYDGMWHYGKRSGLGTFYFSNGDVFQGSWRDDVMHGKGW FYFHIGDRWFANFWKGKANGESRFYSKQGDVFFGQFQDGWRQGDFLCVDVEGTRCIEVWNKGLLVSRKPLDSDKVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	0	1
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	4.7	0.9205
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	7.9	0.9204
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	11.0	0.9163
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	11.0	0.9167
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	11.3	0.8919
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	15.9	0.8998
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	18.0	0.8395
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	19.1	0.9128
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	27.0	0.8924
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	30.0	0.8841

Compare expression of checked genes

Lus10031930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.