Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28060 71 / 5e-14 Pre-mRNA-splicing factor 3 (.1) AT3G55930 64 / 1e-11 Pre-mRNA-splicing factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035093 [exp] 276 / 2e-92 AT1G14600 103 / 1e-25 Homeodomain-like superfamily protein (.1) Lus10040340 [exp] 87 / 4e-19 AT1G28060 751 / 0.0 Pre-mRNA-splicing factor 3 (.1) Lus10023464 [exp] 85 / 2e-18 AT1G28060 743 / 0.0 Pre-mRNA-splicing factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048000 [exp] 74 / 8e-15 AT1G28060 652 / 0.0 Pre-mRNA-splicing factor 3 (.1) Potri.010G213300 [exp] 71 / 5e-14 AT1G28060 653 / 0.0 Pre-mRNA-splicing factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [flax] [poplar] Acylphosphatase PF06544 [flax] [poplar] DUF1115 Protein of unknown function (DUF1115)
Representative CDS sequence Show only first row Show all	>Lus10031931 pacid=23161248 polypeptide=Lus10031931 locus=Lus10031931.g ID=Lus10031931.BGIv1.0 annot-version=v1.0 ATGATGAAGCAGCAGCAGCACAAGGGAATATGTACCAGTAGGCCGTACGTCAATCTTCAGAATCATCATCATCATCATCATAATATGCAGAATGGAGATG GGTTCAGGTGCGAGCAGATGCAGCAGTGCTACTCTGCACCCTCCTCCTCAAATGCCAAATCTTGTATCAATGATTCTCTTCCCACCACATTGTTCAGAGA CAGCAGCATCATCTTCCCTCCTCCTGTCAAGCATGATACTTCTACCCATCTGGATTCTGATTTCCTAAAGTTGATGAAAATGGAGCTGCTGAGAGCATTT CCATCTAAAGCGAAGGACCCTGATCAGGTGGCCGCCGGAGACAATGCCAAGACTCGGGCAGTTGGATGTGATGGTGGCAGAAGTAGTCGTTGCGATTTCG AGCTGTCGCTGTCGCTGCCAGGAGTTGAAGGTCAGAACGTTAATGGTGGATCTCATCATAGCTCGGATCAGCATCAGATAATGTTGATGAGCATGTGCAG TGATGCCTTCTCTTCCTACTATTACTATAGTAGTAACAACACTAGGTTTCAGGATGCCGAGGCTGTGAACAACGAGGAAGACGATGACGATAAACCGCCC AACAAATGCATGCTGGTATGGCAAGGGATCGTTGCGAAACCTAGCTTCAACAGGTTCTCTGTGCACAAGTGCATGGCTGATGTTGTTGCCGAGAAGATAT TCTCTGATGCTGGTGTCGTCGAGTACTGGGATCTCTCGTAG
AA sequence Show only first row Show all	>Lus10031931 pacid=23161248 polypeptide=Lus10031931 locus=Lus10031931.g ID=Lus10031931.BGIv1.0 annot-version=v1.0 MMKQQQHKGICTSRPYVNLQNHHHHHHNMQNGDGFRCEQMQQCYSAPSSSNAKSCINDSLPTTLFRDSSIIFPPPVKHDTSTHLDSDFLKLMKMELLRAF PSKAKDPDQVAAGDNAKTRAVGCDGGRSSRCDFELSLSLPGVEGQNVNGGSHHSSDQHQIMLMSMCSDAFSSYYYYSSNNTRFQDAEAVNNEEDDDDKPP NKCMLVWQGIVAKPSFNRFSVHKCMADVVAEKIFSDAGVVEYWDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	0	1
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	3.7	0.9749
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	4.9	0.9717
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10000844 [exp]	7.2	0.9297
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	7.5	0.9701
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	9.2	0.9615
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	10.1	0.9627
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	10.8	0.9666
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10001997 [exp]	11.4	0.8833
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	12.6	0.9654
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	14.4	0.9602

Compare expression of checked genes

Lus10031931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.