Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02050 163 / 5e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035094 [exp] 214 / 4e-73 AT2G02050 161 / 4e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Lus10019137 [exp] 211 / 1e-71 AT2G02050 163 / 5e-54 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Lus10034424 [exp] 209 / 8e-71 AT2G02050 162 / 3e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099900 [exp] 180 / 1e-59 AT2G02050 159 / 2e-52 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Potri.008G141900 [exp] 178 / 6e-59 AT2G02050 159 / 3e-52 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF05676 [flax] [poplar] NDUF_B7 NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
Representative CDS sequence Show only first row Show all	>Lus10031932 pacid=23161078 polypeptide=Lus10031932 locus=Lus10031932.g ID=Lus10031932.BGIv1.0 annot-version=v1.0 ATGTTGGGCTTGAGGCCTCCTTCAGATTCTTTTCCTTTTGATCGCCCGAGTCTAACGAGTTCCGAGCCAGGGAAAACAAGAAAGAGAACAAAGGAGATCA AAATTTCTAGATTCTTCAATCATTTTCATTCGATTCATCCCGTTGTTTGGAGGGCAAATTCAAGAGACGCAATGGAAGTCCCCGGATCTTCGAAGCCGAT GATTGCTACGCAGGCAGAAATGGTGGAAGCGAGAGTCCCAATGGCTTACAGGGACCAGTGCGCTCACCTTTTGATCCCGCTCAACAAGTGCCGCCAGGCC GAGTTCTATCTGCCATGGAAGTGCGAGAACGAGCGCCATTCCTACGAGAAATGCGAGTACGAGCTTGTCATGGAGAGGATGCTCCAGATGCAGAAAATCC GTGAAGAGGAGGCCAAGCTCAAAAACCCCAACAAACAGGGAGGTGCCGCAATTGGTCTCATCCCCAAAACTGCCAACGCTTAG
AA sequence Show only first row Show all	>Lus10031932 pacid=23161078 polypeptide=Lus10031932 locus=Lus10031932.g ID=Lus10031932.BGIv1.0 annot-version=v1.0 MLGLRPPSDSFPFDRPSLTSSEPGKTRKRTKEIKISRFFNHFHSIHPVVWRANSRDAMEVPGSSKPMIATQAEMVEARVPMAYRDQCAHLLIPLNKCRQA EFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLKNPNKQGGAAIGLIPKTANA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10031932 [exp]	0	1
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	3.7	0.7803
AT5G20050			Protein kinase superfamily pro...		Lus10033032 [exp]	7.0	0.7124
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10014491 [exp]	10.5	0.6411
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10039691 [exp]	11.5	0.6838
AT2G39725			LYR family of Fe/S cluster bio...		Lus10025710 [exp]	15.0	0.6515
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	19.8	0.6915
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	21.2	0.6879
AT5G14230			unknown protein		Lus10022339 [exp]	22.4	0.6937
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	25.7	0.6877
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10034424 [exp]	37.2	0.6872

Compare expression of checked genes

Lus10031932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.