Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 405 / 1e-131 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 392 / 1e-126 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 360 / 1e-115 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G05230 348 / 6e-111 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G04890 339 / 6e-107 HD PDF2 protodermal factor 2 (.1) AT4G21750 335 / 2e-105 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G25530 317 / 2e-99 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1) AT1G79840 300 / 2e-92 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G73360 289 / 2e-88 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 286 / 2e-87 HD HDG12 homeodomain GLABROUS 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014997 [exp] 619 / 0 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10025940 [exp] 495 / 1e-167 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 468 / 2e-156 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 460 / 2e-153 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10038876 [exp] 414 / 2e-141 AT3G61150 296 / 1e-93 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005758 [exp] 361 / 3e-117 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10006765 [exp] 342 / 3e-108 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 338 / 4e-107 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10018359 [exp] 325 / 1e-104 AT4G04890 805 / 0.0 protodermal factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154700 [exp] 426 / 1e-139 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 425 / 5e-139 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 420 / 4e-138 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 405 / 1e-132 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 353 / 4e-112 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 348 / 1e-110 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 340 / 8e-108 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 338 / 2e-106 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.003G052400 [exp] 330 / 1e-103 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.001G184100 [exp] 328 / 9e-103 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10031933 pacid=23161297 polypeptide=Lus10031933 locus=Lus10031933.g ID=Lus10031933.BGIv1.0 annot-version=v1.0 ATGAAAGAAATCAGTGATGCTCAACGTGAACTCAACGTTCCTACTGGTACTGATGCCAGCCCTCAAGTTCATACCGTCGATGCTGACGTTGGATACCAAA ATGGCATCATCCAGCAAGTTGATGGTGGTGCTGAGATGGGTGAAAACTCAGCCCAGTTACGAGGCTCAGGTGATGGTGGGTCTGGTGCTGATCATGAGCA ACAACCTGCTAGGAAGAGGAATTATCATCTCCACACTCAGTTTCAAAAAGAAGAGCTTGAAAGCATCGATTTCACGATCGACCTGAGCAGCACGGTGGGA GGGCTTCATCTTGGTATTCTGCCTAGTAGTACCACTGGCGATAACAAATCCGTATATACAAAGATTGCAATCTTAGCTATGAACGAGCTTATGAACATGG CTTGCGCTGATGAGCCATTCTGGGGGAAGAAAATTGATGATCCTAGCAACCCAAGAGAGGTGTTAAATGTTGAGAAGTATGGTCAATTGAGGTTACCTTC TCATGCGAGGGAGGTGACAAGGGGTTCGGGCTTTGTTGTCATCAATAGACGGGCACTTGTCGAGTTGTTCATGAATGCGAACTCTTGGGCTGAGGCATTT AGTGGATTAGTTGGCAAGGGTGCTATAGTTGATGTGGTATCTTGTGGAGTCGGTGGCACCAGAAATGGTAGTTTGCAACTGATGCGAGCTGAGTTTCAAG CCATTTCTCCCGTGATCCCTGTACATCATATAAAGTTTCTTCGCTTCTGCAAGAAGCAAACTGAACGTATTTGGGCTGTTGTGGATCTCTCGCTCTTCTC GTACGAGGATGGATCGAGTTTGAGCACAGCCAGCATGAGACTGCTTTCTGGGTGTGTCTTAGAGGACTTGGCCCATGGTTGTTGTAAGGTGACATGGGTG GAAAATTGGATGTACGATAAGAATTCAGTGAAGCAGCGGGTGATGCATTCGATGGTTAATCTGGGTACCGGTTTTGGTGCTAGAAGGTGGATTTCCACAC TTCAAAGATATTGCGAGTCTATTGCACTTCTCGCGACTTCTTTTAACTCGCTCCAAGACCCTTCTGTGATTACCATAGCTGGGAAGAGGAACTTGCTGAA GCTGTCTCGGAGGATGATTAACCTCTATTGCGGCGGAATCTCTGTTGCGTCCTCTTCCTCTAAGTGGGAGAAGCGAGAGGCGGCGAATGTGAGCGAGGAC GTGAGGATCGCAGTGAGGAAGAACTCTACCGAGCCAGGGGATACATTGGGAGTTGCTGTGAGCGTCTCCACTTCAATGTGGCTCCCTGTCTCGAGGAAGA AGCTGTTCGAGTTCCTAGTGAACGACGCGACGAGGGAGGATTGGGATGTTATGGTTAGTGGGGCGACAATCAAGAAGTTGGTTCATCTTCCCAAGGCTCG TATTCATGGGAACTCTGTCTCCATCCTTCGAGCTTCGAAATATGGTGGTAGCGATGATCCTACAATGATGCTCCAAGAAATATGGAATGACGAGTCATCG TCCTTACTGGTGTACACGCCGGTGAACGTGCAATCGTTGGAGATGGTGATGAACGGAGGAGACAGCACCTTCGTGGGCTTATTGCCGTCTGGGTTTGCCA TCTTCCCCGATGGCAATGATGGTGTTGGTAGTTTTGATGATGGTACCGGTGCTAGCACTAGCACCGGTACTGTTGGCATTGATAGCAGGGGAGGATGTAT TATGACAGTAGGATTTCAGATACTGGTGAGCACCATTCCGACGACGAGGGTGAAAAGGAAATCGTTGCAGACAGCGAACAACCTCCTCTCACGCACGGTC AAACGAATCAAGGACGCCTTACAGATTGCGTGA
AA sequence Show only first row Show all	>Lus10031933 pacid=23161297 polypeptide=Lus10031933 locus=Lus10031933.g ID=Lus10031933.BGIv1.0 annot-version=v1.0 MKEISDAQRELNVPTGTDASPQVHTVDADVGYQNGIIQQVDGGAEMGENSAQLRGSGDGGSGADHEQQPARKRNYHLHTQFQKEELESIDFTIDLSSTVG GLHLGILPSSTTGDNKSVYTKIAILAMNELMNMACADEPFWGKKIDDPSNPREVLNVEKYGQLRLPSHAREVTRGSGFVVINRRALVELFMNANSWAEAF SGLVGKGAIVDVVSCGVGGTRNGSLQLMRAEFQAISPVIPVHHIKFLRFCKKQTERIWAVVDLSLFSYEDGSSLSTASMRLLSGCVLEDLAHGCCKVTWV ENWMYDKNSVKQRVMHSMVNLGTGFGARRWISTLQRYCESIALLATSFNSLQDPSVITIAGKRNLLKLSRRMINLYCGGISVASSSSKWEKREAANVSED VRIAVRKNSTEPGDTLGVAVSVSTSMWLPVSRKKLFEFLVNDATREDWDVMVSGATIKKLVHLPKARIHGNSVSILRASKYGGSDDPTMMLQEIWNDESS SLLVYTPVNVQSLEMVMNGGDSTFVGLLPSGFAIFPDGNDGVGSFDDGTGASTSTGTVGIDSRGGCIMTVGFQILVSTIPTTRVKRKSLQTANNLLSRTV KRIKDALQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10031933 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	4.4	0.9239
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10001447 [exp]	4.9	0.9116
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	7.7	0.9049
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	8.1	0.9188
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	8.9	0.9025
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	16.6	0.9122
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	16.8	0.9148
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	16.9	0.8401
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	18.3	0.9147
AT2G22590			UDP-Glycosyltransferase superf...		Lus10035951 [exp]	20.2	0.9053

Compare expression of checked genes

Lus10031933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.