Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08790 43 / 0.0002 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031951 [exp] 117 / 1e-31 AT3G04070 56 / 3e-09 NAC domain containing protein 47 (.1.2) Lus10003334 [exp] 91 / 4e-22 AT1G61110 50 / 1e-07 NAC domain containing protein 25 (.1) Lus10022637 [exp] 84 / 3e-18 ND / Lus10033676 [exp] 69 / 8e-13 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10033279 [exp] 57 / 5e-09 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10022965 [exp] 57 / 9e-09 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10010294 [exp] 56 / 3e-08 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 53 / 1e-07 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10024006 [exp] 51 / 1e-06 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 72 / 8e-14 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.001G220500 [exp] 62 / 2e-10 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1) Potri.015G002900 [exp] 60 / 8e-10 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G231300 [exp] 60 / 8e-10 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 58 / 1e-09 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028300 [exp] 57 / 4e-09 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.014G163600 [exp] 53 / 1e-07 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028700 [exp] 52 / 2e-07 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G029200 [exp] 49 / 2e-06 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 45 / 5e-05 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10031937 pacid=23161203 polypeptide=Lus10031937 locus=Lus10031937.g ID=Lus10031937.BGIv1.0 annot-version=v1.0 ATGGAGTTTGACGATGGTCTTGGGAGGCCGGCCGGGTTCCGATTCCACCCGAAAGACGAGGAGCTTGTCCTTCTGTACCTCCTCAAGAAGCTACGCGGGA GACCACTACCGTGCGCGTCGGCGGTTAGGGATTGCGATCTTTACGGAGAGCTCGAGCCATGGGATATATGGTCCAAGTACCACCACCACGGTGATGACGA CGACGAGGACCTCTACTTCTTCACGCCGCTCAAGAAGAAGAAGCAAAACTTCAAGAGATTCGTTCGTTCGGTAGGAACCCACGGGGCCACGTGGCACGAG GAGAATACGGGGGAGCCGGGAGAAAGTCACGACGGGAAGGTGGTGTGGGAGTTGAAGCGGTACAAATACTTGAGCAAAAAAGATTCGGAGAAGAAAAAGA AGAGGAAGAGAGGCCAAGATTATACTACTGATCCTGATCATGATCATGACGATGAGGGAGTAAAAGAAGGAGGAGGGTGGTTTCTTGACGAGTACAAGTT GAAGGATGAGGAGATCCCGTACTTAGGGCTTGATCGTACGGCAGTGAATAGCCTTGTGGTGTGCCGGCTTAGGAAAGCAAAGGAGGATTCCAAGAAGAAG AAGAATGGAAAGAAAAGAAGAAAGGTTATTCGTTATCTTGATGATGATGATGCTGCTGCTGAACAAGAACAAGTCGTTGTGGGCACTGATCAGAATACTT GTGACAGTAATAAGGAGATTACTGGAGTAGTGACGTGTCCAGTTGTGGTAGAAGATGAGAATGTCGTCGGTGGTGAAGGCAGTAGTGGGCTGATACAGGA CTGGGGGGAGGATGAAATATTGAAGCTTGATGAGTTATTGAGTAGTGATGATGGTGATTTGAATTTGGAGTATACTACTACTGGTAGTAGTGCTGGTGAT GTGATGGTGATACCACAGGAGGAGGAGGAGGAGGAGGAAGAGACTCAAGGAACATTGGATGATTTCTTCACTGGCTTGGGCGATTTTTTGCACTTTTGA
AA sequence Show only first row Show all	>Lus10031937 pacid=23161203 polypeptide=Lus10031937 locus=Lus10031937.g ID=Lus10031937.BGIv1.0 annot-version=v1.0 MEFDDGLGRPAGFRFHPKDEELVLLYLLKKLRGRPLPCASAVRDCDLYGELEPWDIWSKYHHHGDDDDEDLYFFTPLKKKKQNFKRFVRSVGTHGATWHE ENTGEPGESHDGKVVWELKRYKYLSKKDSEKKKKRKRGQDYTTDPDHDHDDEGVKEGGGWFLDEYKLKDEEIPYLGLDRTAVNSLVVCRLRKAKEDSKKK KNGKKRRKVIRYLDDDDAAAEQEQVVVGTDQNTCDSNKEITGVVTCPVVVEDENVVGGEGSSGLIQDWGEDEILKLDELLSSDDGDLNLEYTTTGSSAGD VMVIPQEEEEEEEETQGTLDDFFTGLGDFLHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	4.6	0.8968
AT4G33985			Protein of unknown function (D...		Lus10019852 [exp]	5.2	0.8416
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	5.5	0.8951
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	7.0	0.8793
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	7.7	0.8826
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	8.5	0.8775
					Lus10034979 [exp]	10.8	0.8871
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	11.8	0.8815
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	15.1	0.8737
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	15.5	0.8688

Compare expression of checked genes

Lus10031937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.