Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01910 822 / 0 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT1G14690 794 / 0 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT4G26760 489 / 4e-167 MAP65-2 microtubule-associated protein 65-2 (.1) AT5G55230 483 / 7e-165 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT1G27920 397 / 1e-131 MAP65-8 microtubule-associated protein 65-8 (.1) AT5G51600 399 / 1e-130 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT2G38720 385 / 2e-126 MAP65-5 microtubule-associated protein 65-5 (.1) AT3G60840 380 / 8e-124 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G62250 324 / 2e-103 MAP65-9 microtubule-associated protein 65-9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035099 [exp] 1204 / 0 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10032567 [exp] 483 / 1e-163 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 467 / 1e-156 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10015684 [exp] 459 / 4e-153 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10037691 [exp] 451 / 5e-150 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10026114 [exp] 436 / 3e-146 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10008705 [exp] 430 / 2e-144 AT2G38720 565 / 0.0 microtubule-associated protein 65-5 (.1) Lus10041635 [exp] 401 / 6e-133 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1) Lus10015789 [exp] 380 / 1e-124 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139700 [exp] 927 / 0 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.011G092500 [exp] 510 / 2e-175 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 491 / 7e-168 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.003G173300 [exp] 429 / 1e-143 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.003G192400 [exp] 427 / 3e-143 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.015G131400 [exp] 430 / 3e-142 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.014G070100 [exp] 411 / 4e-135 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.001G055100 [exp] 401 / 3e-132 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.012G129600 [exp] 403 / 9e-132 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.006G269800 [exp] 146 / 1e-41 AT5G51600 186 / 2e-56 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [flax] [poplar] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Lus10031939 pacid=23161161 polypeptide=Lus10031939 locus=Lus10031939.g ID=Lus10031939.BGIv1.0 annot-version=v1.0 ATGCTGGCAATTGGAAGTCCTAATTTCTCCACTAGTATGCGTACAAGCACCAGTTGTAACGCTTTGCTCAGAGAGCTCCAGGTTCTCCTCTTTTGCTTTG CTTTATCTGTTAAAAATGAAAAGCAAATATGGAACGAAATCGGAGAGAGTGAGGCTGAAAGGGAACGCATGCTGATAGACTTGGAAAGGGAGTGCTTAGC AGTTTATCAGAGGAAAGTAGAAGATGCTGCTAATTCCAAAGCACGTCTTCATCACTCAGTTGCAGCTAAGGAAGCCGAACTTGCAACCCTCATGGCAGCC CTTGGAGAGCTTAACATTCATTCGCCGATGCAGAAGGATAAGAAGACCATGTCATTAAAAGAGAAACTTGCATCCGTTTCACCGTTGGTGGATGACTTAA AGATAAAGAAAGAGGAGCGGATGAAGCAATTTGATGATATAAAGGCACAGATTGAGAAAATCAGTGGGGAGATATCTGGGTATAGTAGTGTCAACAACTC TATGATGAGTAGTCTATCTCTTGATGAACATGACTTGTCAATGAGGAAGCTAAATGAATATCAGACACATCTCCGAACCCTTCAAAAGGAGAAGTCGGAC CGTCTCAATAAGGTCTTTGAATGTGTGAATGAGGTGCATTCTCTCTGCAGCGTGCTTGGTTTGGATTTTGGAAAGTCTGTTAGTGAGGTCCATCCAAGTT TGCACGGAGCTAACCAAGAACAATCAACTAATATAAGTAACAGTACGCTTGAGGGTCTAGAACAGACCATTCTGAAATTGAAATCTGAACAGAAAGCTCG AATCCAGAAGCTGAAAGATATTGGAGCTTCATTACTTGAGCTTTGGAATTTGATGGACTCGTCAAAAGCAGATAAGAATAAGTTCTCAAGAATTACTTTC ATTCTCGGCTCATCAGAGTCTGAGATAGTAGAACCTGGGTTTCTTTCAATGGAGACAATTAATAAGGCATCTGTGGAAGTGGAAAGACTCACTAAATTGA AAGCCAGTAGAATGAAAGAGCTTGTTATGAAGAAAATAGTAGAACTGGAAGAGATATGCAAAATGACTCACATTGAACCCGACACAAGTACTTCAGCTGA GAAGTCCACTGCACTAATAGATTCTGGTTTAGTTGATCCTGGTGAACTCTTAGCAAACATTGATGAACAAATAACCAAAGCAAAGGAGCAAGCTATGAGC AGGAAAGAGATAATGGATAGGATAGACAGATGGCTTGCAGCATGTGAAGAGGAAAATTGGCTTGAAGACTACGAGCTAGATAACAACAAATATTCGGCTG GAAGAGGGGTTCATATTAACCTAAAGCGCGCAGAGAAAGCTCGTATTACAGTGAACAAGATTCCAGCGATGGTTGACAATCTGATAAACAGAACTTTGAT CTGGGAAGATGATATGAAGATGCTGTTCCTTTATGATGGAGTGAGACTGGTTTCAATACTAGAAGATTACAAAATGACTAGACAGCATAGACAAGACGAG AAGCGAAGATTCAGGGACCAAAAGAAGCTCCAAGATTTGCTGCTAACAGAGAAGGAATTGATGTACGGGTCCAAACCAAGCCCACGAAGGACGAACAGCT TCAGGAAGCCAAACGGTTATCGTGGAAATGGGTCGATGACTCCCACACCACGCCGCAATTCTGTATGTGGAACTCCTCCTGAACCCCTCACGCCACGGTC TTATTCAGGGCGAAATAATGGATATTTCAAGGAAATGAGGAGGTTATCAACTACTCCGTTGAACTTTGTGGCGATAACAAAAGAAGATACCATGTCGTTC GCCTCAATTTCCGGTTCAGAGCCGGGATCCCCTCCTCATAGCTAA
AA sequence Show only first row Show all	>Lus10031939 pacid=23161161 polypeptide=Lus10031939 locus=Lus10031939.g ID=Lus10031939.BGIv1.0 annot-version=v1.0 MLAIGSPNFSTSMRTSTSCNALLRELQVLLFCFALSVKNEKQIWNEIGESEAERERMLIDLERECLAVYQRKVEDAANSKARLHHSVAAKEAELATLMAA LGELNIHSPMQKDKKTMSLKEKLASVSPLVDDLKIKKEERMKQFDDIKAQIEKISGEISGYSSVNNSMMSSLSLDEHDLSMRKLNEYQTHLRTLQKEKSD RLNKVFECVNEVHSLCSVLGLDFGKSVSEVHPSLHGANQEQSTNISNSTLEGLEQTILKLKSEQKARIQKLKDIGASLLELWNLMDSSKADKNKFSRITF ILGSSESEIVEPGFLSMETINKASVEVERLTKLKASRMKELVMKKIVELEEICKMTHIEPDTSTSAEKSTALIDSGLVDPGELLANIDEQITKAKEQAMS RKEIMDRIDRWLAACEEENWLEDYELDNNKYSAGRGVHINLKRAEKARITVNKIPAMVDNLINRTLIWEDDMKMLFLYDGVRLVSILEDYKMTRQHRQDE KRRFRDQKKLQDLLLTEKELMYGSKPSPRRTNSFRKPNGYRGNGSMTPTPRRNSVCGTPPEPLTPRSYSGRNNGYFKEMRRLSTTPLNFVAITKEDTMSF ASISGSEPGSPPHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	0	1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	1.0	0.9456
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	1.4	0.9337
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	1.7	0.8826
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	3.5	0.8552
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	3.7	0.8321
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	3.9	0.8492
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10000937 [exp]	4.2	0.8420
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	4.7	0.8245
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	6.3	0.8266
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	6.9	0.8109

Compare expression of checked genes

Lus10031939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.