Plant FIBer expression Database

Lus10031940 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01905 211 / 2e-68 CYCJ18 cyclin J18 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035100
[exp]
298 / 2e-99 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0065 Cyclin PF00134 Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence
>Lus10031940 pacid=23161235 polypeptide=Lus10031940 locus=Lus10031940.g ID=Lus10031940.BGIv1.0 annot-version=v1.0
ATGCATTCGAAAACTCCCGCAAAAACGAAACCATCTTCCAGAATAGCAGGAATGGAGGCAGAACTGCATAGGCGGAGGAGTAGAATGGCGAAGGGCAGCT
GCGATTCCAACTTGCGGCCGAGAGCAGTGGAGTTCCTCATCATTTGTGCTCATCAACTAAAAGTCACCCCGATTGTCAAGTACACAGCACTGTCTTTCTT
CGCTGATCGATTTTTTCCATCTCTTTTCAGGTCCGAAAAGCCAAAGAAGAAGGTAAACTGGCTTTTGCAGCCCATCAGGGAGAGCAATTTACAGTTATTT
GCGCTTGTTTCCTTGTGGATCTCCAGCAAGGTACATAATCGTACTCCCATACGAGTTGGATCCTTGAAGTCATTGAGTGATGAGAGTATTAAGGAGCAAC
ATTTTGCTACCCGAGACTTCCTGGAAGCTGTAATGGACTATGAGATCGGTGCGAAAAACATCCTCTTTGTATTTTTTGAGGATCTCTTTCATCAGTTCAA
AGGTGTTTCTAAGTTTGGCGAACTATTGAGCTTTGAGGCCTGCATGGATATCATCGATCTTCTTTATGAAAAGGAGTCTTGGATTCTTTCTTGTTCTCCT
TGCTCTCTTGCTGCATCAACCCTGGTTGCTTCATACCTCATAACAGTACCGAAACAAAGATGGGAGTTCCCTGTTCTTCCCTGGGGTAGGATTGCTAAAC
TTGAATTTCAACTTATTCTTTCATATATGCTGCAGTGGGTATAA
AA sequence
>Lus10031940 pacid=23161235 polypeptide=Lus10031940 locus=Lus10031940.g ID=Lus10031940.BGIv1.0 annot-version=v1.0
MHSKTPAKTKPSSRIAGMEAELHRRRSRMAKGSCDSNLRPRAVEFLIICAHQLKVTPIVKYTALSFFADRFFPSLFRSEKPKKKVNWLLQPIRESNLQLF
ALVSLWISSKVHNRTPIRVGSLKSLSDESIKEQHFATRDFLEAVMDYEIGAKNILFVFFEDLFHQFKGVSKFGELLSFEACMDIIDLLYEKESWILSCSP
CSLAASTLVASYLITVPKQRWEFPVLPWGRIAKLEFQLILSYMLQWV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01905 CYCJ18 cyclin J18 (.1) Lus10031940
[exp]
0 1
AT5G47380 Protein of unknown function, D... Lus10007795
[exp]
6.9 0.7859
AT4G11720 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, ha... Lus10006315
[exp]
13.6 0.7942
AT1G29630 5'-3' exonuclease family prote... Lus10002782
[exp]
14.0 0.7771
AT1G18090 5'-3' exonuclease family prote... Lus10027250
[exp]
16.2 0.8012
AT2G37690 phosphoribosylaminoimidazole c... Lus10005526
[exp]
16.4 0.7630
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Lus10043299
[exp]
23.0 0.7375
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10004624
[exp]
27.1 0.7600
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Lus10019443
[exp]
27.5 0.7849
AT3G17030 Nucleic acid-binding proteins ... Lus10016902
[exp]
30.0 0.7698
AT4G23885 unknown protein Lus10003881
[exp]
30.3 0.6852

Lus10031940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.