Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14700 426 / 3e-150 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2) AT3G17790 417 / 3e-147 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1) AT1G25230 417 / 5e-147 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G01890 404 / 3e-142 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2) AT2G01880 376 / 4e-131 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035100 [exp] 614 / 0 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2) Lus10019133 [exp] 385 / 1e-134 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2) Lus10034429 [exp] 374 / 8e-131 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2) Lus10017059 [exp] 45 / 7e-05 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101900 [exp] 463 / 2e-165 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1) Potri.008G139100 [exp] 445 / 6e-158 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2) Potri.012G042200 [exp] 439 / 7e-156 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1) Potri.015G031400 [exp] 437 / 3e-155 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1) Potri.015G031300 [exp] 422 / 3e-149 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10031941 pacid=23161165 polypeptide=Lus10031941 locus=Lus10031941.g ID=Lus10031941.BGIv1.0 annot-version=v1.0 ATGGCGATCCCAAGCTGCAGCTTCTCCCAGCAACTGACGAGGCTGGAACACCAAGTGAAGGACGATGGGTCCCTCAGCCTTCTGGTTATTGGTGATTGGG GCCGACGTGGCCTTTTTAACCAATCTCAAGTTGCTTCCCAGATGGGAAGGATTGGGGAGGAATTAGATATTGATTTTGTGATATCGACGGGGGACAATTT CTACGATAATGGGCTCAAAGGGCTGCATGATCCTGCTTTTGAAGACTCCTTCTCCAAAGTCTACGCTGCAAATAGCCTCCAGAAGCCTTGGTATACTGTT CTGGGGAATCATGACTACAGAGGTGATGCATTGGCGCAATTGAATCCTGTACTTAGGAAGGTTGATAGCAGATGGCTTTGCCATAGATCTTTTATGGTCG ACACAGAAATAGCGAGCTTCTTCTTCGTGGACACAACCCCATTTGTTGACAACTATTTCACCGACAAAATCCATACTTACGACTGGAGAGGAGTCCATCC TCGCAAAGCCTACCTTGCAAACCTTCTCAAGGAGTTGGAGACTGCACTGAGAGAGAGCAGTGCAAGATGGAAAATAGTGGTGGGTCACCATCCTATCAGA AGTGCCGGCCACCACGGCGACACTCGAGAACTCATCCAACATCTCCTTCCTATACTCAAGGCCAACAACGTGGATATGTACATCAACGGCCACGACCACT GCTTGGAGCACATCGGCAGCCATGATAGCCCGATTCAGTATTTGACGAGCGGAGGAGGGTCGAAGGCATGGAATGGAGACATAAAGAGCTACGACGAACG TGTGATGAAGTTCTACTACGATGGTCAAGGGTTCGTTTCCATGCAACTTACGGATACTAACGTAGAGGTTTTGTTTCACGATGTTTTCGGCCAGGTTTTA CATCGATGGCACGTCTCCAAGGACCTCCATTCTTCTGTATGA
AA sequence Show only first row Show all	>Lus10031941 pacid=23161165 polypeptide=Lus10031941 locus=Lus10031941.g ID=Lus10031941.BGIv1.0 annot-version=v1.0 MAIPSCSFSQQLTRLEHQVKDDGSLSLLVIGDWGRRGLFNQSQVASQMGRIGEELDIDFVISTGDNFYDNGLKGLHDPAFEDSFSKVYAANSLQKPWYTV LGNHDYRGDALAQLNPVLRKVDSRWLCHRSFMVDTEIASFFFVDTTPFVDNYFTDKIHTYDWRGVHPRKAYLANLLKELETALRESSARWKIVVGHHPIR SAGHHGDTRELIQHLLPILKANNVDMYINGHDHCLEHIGSHDSPIQYLTSGGGSKAWNGDIKSYDERVMKFYYDGQGFVSMQLTDTNVEVLFHDVFGQVL HRWHVSKDLHSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10031941 [exp]	0	1
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	8.1	0.9191
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	10.0	0.8742
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	15.9	0.9189
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	22.1	0.9165
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	28.6	0.9108
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	38.0	0.9077
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10025838 [exp]	38.2	0.8961
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	39.9	0.9076
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	44.1	0.8985
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	46.2	0.9059

Compare expression of checked genes

Lus10031941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.