Plant FIBer expression Database

Lus10031943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035103
[exp]
79 / 6e-19 AT2G01913 47 / 4e-07 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G140000
[exp]
51 / 5e-08 AT2G35585 61 / 4e-12 unknown protein
Potri.010G101500
[exp]
50 / 7e-08 AT2G35585 60 / 2e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10031943 pacid=23161132 polypeptide=Lus10031943 locus=Lus10031943.g ID=Lus10031943.BGIv1.0 annot-version=v1.0
ATGAGCTTGAGCAACCACCACCTGCAGCTGCAGGGACTCGATAACTACTGCAATAACCCACAGGAAGGAATCATCAGCTGGGAATTCAATGGTAACCAAG
GAGTAGTGGTGGATCCGACGACGGATGAGGTGGTGGTGTGGCCAGTTGAGCATCCGACGGAGCCGTTGGATGAAGACCGTCCTGTTAAATGTCCCATTCC
TACCTCTTCCTTTACTACTCCTACTGCTCCAATTCCTCATCATCATCATCATGTTCATGCGGTGAAAATGGAGGGAAGAAGAAGTACTCATCATCATCAT
AGGAGAAGTTTTGAGAGTTGGAGGAAGAGATGTAGCCCGAAGAATCCACCAATATCAGCAATGCCAATAGCGATAGATCAGAAAGCTGCTGCTGCTGCTG
ATGATGATGAAGGAGTAATACTGGAACTTGCAGAAGCCCATCAGAATCTCGCAGTTCGAAAGCGTCATCATACGCTTAGCCAGCAGCAGCATCCTCCTCA
TCATCCTAATTCTGAGGATGTGTTGAGGAGAATGGCTTCTCTCCCACCCACCACCACCAACAACAACAACAACAATACCATCTTCCATATGCTTCAGCAT
GCATCTCCCTAA
AA sequence
>Lus10031943 pacid=23161132 polypeptide=Lus10031943 locus=Lus10031943.g ID=Lus10031943.BGIv1.0 annot-version=v1.0
MSLSNHHLQLQGLDNYCNNPQEGIISWEFNGNQGVVVDPTTDEVVVWPVEHPTEPLDEDRPVKCPIPTSSFTTPTAPIPHHHHHVHAVKMEGRRSTHHHH
RRSFESWRKRCSPKNPPISAMPIAIDQKAAAAADDDEGVILELAEAHQNLAVRKRHHTLSQQQHPPHHPNSEDVLRRMASLPPTTTNNNNNNTIFHMLQH
ASP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01913 unknown protein Lus10031943
[exp]
0 1
AT2G01913 unknown protein Lus10035103
[exp]
1.0 0.9069
AT5G62890 Xanthine/uracil permease famil... Lus10010707
[exp]
3.7 0.8985
AT2G19090 Protein of unknown function (D... Lus10015534
[exp]
5.5 0.8455
AT3G15680 Ran BP2/NZF zinc finger-like s... Lus10002032
[exp]
6.2 0.8772
AT4G13600 Carbohydrate-binding X8 domain... Lus10032601
[exp]
11.7 0.8472
AT5G38300 unknown protein Lus10023528
[exp]
11.9 0.6865
AT1G62050 Ankyrin repeat family protein ... Lus10003524
[exp]
14.9 0.8363
AT1G11915 unknown protein Lus10023362
[exp]
15.0 0.8318
AT1G67720 Leucine-rich repeat protein ki... Lus10036935
[exp]
18.8 0.8229
AT1G78580 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE... Lus10005559
[exp]
19.3 0.8178

Lus10031943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.