Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 965 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 943 / 0 TMK1 transmembrane kinase 1 (.1) AT1G24650 488 / 2e-158 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 488 / 7e-158 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 258 / 4e-74 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 253 / 2e-72 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G23540 251 / 1e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G20530 242 / 1e-71 Protein kinase superfamily protein (.1) AT4G02010 250 / 4e-71 Protein kinase superfamily protein (.1) AT5G01020 240 / 1e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 975 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 968 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 928 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 677 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 674 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10035104 [exp] 637 / 0 AT2G01820 452 / 2e-149 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 550 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 517 / 1e-168 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 514 / 9e-168 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137801 [exp] 1001 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 994 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 971 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 764 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 630 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 524 / 2e-171 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 517 / 9e-169 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G073900 [exp] 495 / 1e-160 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 492 / 5e-159 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 489 / 6e-158 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031944 pacid=23161207 polypeptide=Lus10031944 locus=Lus10031944.g ID=Lus10031944.BGIv1.0 annot-version=v1.0 ATGAAAAAGCCTCGCCGGCCGGGACTCAGCGGTACTGTTCTGACCCTTCTCCTTCATCTCCTCCCCTTTGCAATCTCTCAGTCCGTCTCTCCCGATGCCG CCGCCATGATGAAGCTTCGGGACAATCTGGGTGACCTGAAGGAGTGGGCCGGATCCGACCCGTGCTCCGGCTGGGACGGAGTTGTTTGTTCCGGGAACAG GGTCACCCGTATCAAGATCAGCGATAAGGGTATAAAGGGCTCCCTCCCGCAGGAGATGGCTAACTTGACTTCGTTAGCCATCTTAGAAGTCGACGACAAC CAGTTAACGGGTCCAATTCCGGATTTATCTGGGCTGACCTCGTTAACTTACCTCAACTTCATGCACAATCGTTTCGACTCCATCCCTCCGAATTTCTTCT CCGGTCTGTCCGGTTTGGAGGAAGTGTACCTCGCCCACAATCCGCTTTCCGCCTGGGTGATCCCGCCGACGCTGAAGGACTCGCCGTCGTTGAAGAATTT CTCCGCCGATAACAGCAGCCTTACTGGTTCCCTACCTGATTTCCTCTTCAATGGCGATACCTTCAGCGGGCTTAACCATCTGCGTTTGTCTTACAATTAC TTGCAAGGACCTCTCCCGGCGAATGCTTCCAACTCGTATCTCGTCTCTCTGTGGTTGAACAATCAGAAGGGCGATTCCAAGATGAATGGGACGATCACAG TGTTGCAGAATATATCCACTTTGACGCAGGCTTTTTTACAGAGCAACAGCTTTACGGGTCCTATCCCGGATTTTTCCGGGTCGTCGTTGCAGGAATTGGA TGTGAGGGATAATCAGATGACTGGTATTGTTCCTCCTTCTTTAGCTAAGATTGCTACTTTGACAAACTTGGTTCTTACTAACAATTTGCTCCAAGGACCG ACTCCGGAGTTCCCCAAGTATATTACGCTGGATATGAGAAATGGTTCGAATAGGTTCTGTTTGGATAAACCTGGGGTTAGTTGTGATGCTCGAGTTAATG AATTGCTAGCAGCTGTTGAAGGGTTTGGATACCCTGCTGTTTTGGCTCAGAGTTGGGAAGGAAACGATCCTTGCAAGAATTGGGCTGGGATTCAGTGTTC TCCTTCTGGAGGAGATATTATAGTCATCAATTTGGATAACAAGGGGCTTACCGGTTCGATTTCGCCTAATTTCGCCTCAATTGCTTCGTTGCAGAAGCTG ATTCTTTCGCGTAATGATCTCACTGGTACCATACCGGATGAGCTGACTAAGTTGAGTAATCTTAAGGTGTTGGATGTTTCTGATAATGATATCCATGGGA AAGTTCCTTCATTCAATGGTCCCAATGTGATTACTGATGGGAATCCGAATATCGGTAAGGAGCTCGTTGTTTCTCCTCCAGGGCCGACTAAAGGCGGAGG AGGTGGCGGGTCTGGTGGGAATAATGGTGGTGGTGATGGAGGTAGTGGTAAGAGTTCTAGTCCTGCTGGGAAAGTTGCAGGTTCAGTTGCTGCAGTTGTT GTTCTTGTGGGTTTGGGCGGGGTTTGTTTCTTTCTCTACTGTAGGAAAAGGAAGCGATACAGCAAGGTCCAAAGCCCGAGCACGATGGTGGTTCATCCTC GCGATTCTGACAACAACGATGCTGTGAAGATAACCGTTGCTGGATCGAGGTCAAATGGCTTCTCGGGCAGCATCAACACAGCGGCTAGCAGCAATTGTTC TGCTGATATCCACGTTGTGGAAGCAGGGAGCATGGTGATCTCTATTCAAGTTTTGAGAGAAGTGACTGATAACTTCAGTCCTGACAATATACTAGGAAGA GGCGGGTTTGGTACCGTTTACAAGGGCGAATTACACGACGGGACAAAAATCGCGGTGAAACGGATGGAGGCTTCTGTGGTGAGCGATAAGGGAATGACGG AGTTCATGTCTGAGATTGCGGTGCTGACCAAGGTTCGACATCGCCATCTTGTTTCGCTCCTCGGGTATTGCCTGGATGGGAATGAGAAGATCCTTGTCTA TGAGTATATGCCTCAGGGAACTCTTAGTAGGTTCTTGTTTCACTGGAAGACCGAAGGGTTGAAGCCGTTGGAATGGACGAGGAGACTGACGGTTGCTTTG GATGTCGCTAGAGCTGTCGAGTATCTGCATGGTTTGGCACACCAGAGTTTCATCCATCGGGATCTCAAGCCTTCGAATATCCTGCTGGCAGATGACTTGC GCGCGAAAGTTGCAGATTTTGGGTTGGTTCGCCTTGCTCCCGAGGGAGTAAACTCTATTTCGACGAGACTGGCTGGAACTTTCGGGTACATGGCCCCAGA ATATGCAGTGACTGGACGAGTAACGATCAAGGTCGACGTCTTCAGCTTCGGGGTGATACTAATGGAACTAATCACGGGACGTAGAGCCCTAGACGAAACC GAGCCAGAGGACAGGCTCCATCTCGTACCCTTCTTCCGAAGGACGCTGATCGACAAGAAGGCGTTCAATCAGGTGATCGACTCGTCGATCGAGCAGAACG AGGAGACACTCGCCAGCATTTCCACAGTTGCTGACCTGGCAGGTCACTGCACAGCGAGGGAGCCGTACCAGAGACCTGAAATGAGCCATGTAGTCAACAC ACTTTCGTCCCTCGCCGAGCTCTGGAAACCAGATCGTTCTGGCCAGCAGGACGGGTACGATGATGACCTGGCGATGATCGACTTCGACATGACGTTGCCT CAAGCACTGAAGAAGTGGCAGGAGATCGAAGGGGACGAAAGCAACATCTCCGCTTTGGATACTACGCAGACTAGCATATCGACTCGGCCTCCTGGATTTG CGGATTCTTTCACATCAACGGATGCCCGGTAG
AA sequence Show only first row Show all	>Lus10031944 pacid=23161207 polypeptide=Lus10031944 locus=Lus10031944.g ID=Lus10031944.BGIv1.0 annot-version=v1.0 MKKPRRPGLSGTVLTLLLHLLPFAISQSVSPDAAAMMKLRDNLGDLKEWAGSDPCSGWDGVVCSGNRVTRIKISDKGIKGSLPQEMANLTSLAILEVDDN QLTGPIPDLSGLTSLTYLNFMHNRFDSIPPNFFSGLSGLEEVYLAHNPLSAWVIPPTLKDSPSLKNFSADNSSLTGSLPDFLFNGDTFSGLNHLRLSYNY LQGPLPANASNSYLVSLWLNNQKGDSKMNGTITVLQNISTLTQAFLQSNSFTGPIPDFSGSSLQELDVRDNQMTGIVPPSLAKIATLTNLVLTNNLLQGP TPEFPKYITLDMRNGSNRFCLDKPGVSCDARVNELLAAVEGFGYPAVLAQSWEGNDPCKNWAGIQCSPSGGDIIVINLDNKGLTGSISPNFASIASLQKL ILSRNDLTGTIPDELTKLSNLKVLDVSDNDIHGKVPSFNGPNVITDGNPNIGKELVVSPPGPTKGGGGGGSGGNNGGGDGGSGKSSSPAGKVAGSVAAVV VLVGLGGVCFFLYCRKRKRYSKVQSPSTMVVHPRDSDNNDAVKITVAGSRSNGFSGSINTAASSNCSADIHVVEAGSMVISIQVLREVTDNFSPDNILGR GGFGTVYKGELHDGTKIAVKRMEASVVSDKGMTEFMSEIAVLTKVRHRHLVSLLGYCLDGNEKILVYEYMPQGTLSRFLFHWKTEGLKPLEWTRRLTVAL DVARAVEYLHGLAHQSFIHRDLKPSNILLADDLRAKVADFGLVRLAPEGVNSISTRLAGTFGYMAPEYAVTGRVTIKVDVFSFGVILMELITGRRALDET EPEDRLHLVPFFRRTLIDKKAFNQVIDSSIEQNEETLASISTVADLAGHCTAREPYQRPEMSHVVNTLSSLAELWKPDRSGQQDGYDDDLAMIDFDMTLP QALKKWQEIEGDESNISALDTTQTSISTRPPGFADSFTSTDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10031944 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	2.4	0.8639
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	2.4	0.8907
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	4.5	0.8623
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	5.5	0.8477
AT3G55420			unknown protein		Lus10040295 [exp]	5.5	0.8608
AT3G55420			unknown protein		Lus10023413 [exp]	10.2	0.8082
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	11.4	0.8629
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	12.4	0.8545
AT5G49170			unknown protein		Lus10006495 [exp]	15.9	0.8493
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10006843 [exp]	17.7	0.8342

Compare expression of checked genes

Lus10031944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.