Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01970 224 / 1e-70 unknown protein AT2G30530 223 / 5e-70 unknown protein AT1G30050 187 / 8e-56 unknown protein AT4G02800 104 / 4e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035153 [exp] 441 / 4e-154 AT5G01970 264 / 8e-85 unknown protein Lus10034444 [exp] 323 / 3e-108 AT2G30530 268 / 3e-86 unknown protein Lus10019115 [exp] 316 / 4e-105 AT2G30530 267 / 5e-86 unknown protein Lus10035609 [exp] 137 / 3e-37 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 125 / 4e-31 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10022037 [exp] 103 / 1e-24 AT4G02800 276 / 1e-91 unknown protein Lus10014668 [exp] 99 / 6e-23 AT4G02800 262 / 1e-85 unknown protein Lus10000658 [exp] 96 / 5e-22 AT4G02800 266 / 1e-87 unknown protein Lus10042577 [exp] 0 / 1 AT4G02800 109 / 1e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G132300 [exp] 326 / 1e-108 AT2G30530 253 / 9e-80 unknown protein Potri.013G160100 [exp] 322 / 7e-107 AT2G30530 266 / 8e-85 unknown protein Potri.016G141300 [exp] 245 / 2e-77 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 244 / 2e-76 AT5G01970 352 / 2e-118 unknown protein Potri.002G053100 [exp] 98 / 7e-23 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 96 / 4e-22 AT4G02800 291 / 3e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031947 pacid=23161230 polypeptide=Lus10031947 locus=Lus10031947.g ID=Lus10031947.BGIv1.0 annot-version=v1.0 ATGGCATATAGGAGAAGAACTCAGTCGATGCCGTCGCCGTGGGCGGCTTCCACGCCGGCCTTTAACTCCTACGATAATCAGAGGGACGAAGATAAGAAGG GCAGGCAAATCGATCAGGGAGCCCGAGATTCAAATTCAGCAGCCACGACTGGTCTCGCCGCCAAAGCCATCGGAGCTTCCTCCGCCGCCCAAACCTCCCG AGACTCCTCCCTCTCCTCCGCTTATGCCACCTTTCCTTCCTCTCCTTCCTTCTCCTCTATTCATTCTTCGTCCAATGCTTCCAAGAATGGAACTCCAACT AATGAAAGCCGCAGAAAGAAAGAAGGTCCTGTCTTGCGCAAAGGGCTCAATGCGATATCATCATCCCTCAACTATATCGGCAATGCAGTAGAAGAGGGCC TCACGAAGGTGGAGAACCGTACAGCTGACATAATCCAAGAAACACGAAAGCATATAAGGGAAAGGCCTGGCGGTAGTACCGCAGAGAACCAGACAACAAG CCAAAGTACTGCAGGGCTACAACCTCAAGTACAGGGAAAGGTGCAGCAGCCACAAACACAAACCGAACTGGAGCTTCAGCTGAAGGCATCTCGCGACGTT GCAATGGCAATGGCTGCTAAAGCAAAACTATTGCTTCGGGAGCTGAAAACTGTTAAAGCTGATTTGGCTTTTGCGAACCAGAGGTGTACTCAGCTTGAGG ATGAAAACAAGGTCCTCAGGGAGAGTCGCGAAAATGGTGGTAATCTAGAAGATGATGACCTGATTCGTCTTCAACTGGAGTCACTACTAGCAGAAAAGGC ACGGTTGGCCCACGAGAACTCAGTTTTCGCCCGTGAAAATCGATTCCTAAGCGAAGTAGTGGAATATCACCAGCTGACAATGCAGGATGTGGTGTACTTG GACGAAGGCACGGAAGAAGTCACAGAAGTATACCCCGTCAAGGTAGTTTCGCAAACCCTGTCCAGTGCAGGAGCAGCCACATCAGCTGAAATGTCCGTCG GGACAAACCTGGTCGGAAGTAGAGAGACGTTGGTGCACCCTGTGCCACCACCCGGGCTCGGGATGGGCACAGAGCAGGCTTCTCGCTAA
AA sequence Show only first row Show all	>Lus10031947 pacid=23161230 polypeptide=Lus10031947 locus=Lus10031947.g ID=Lus10031947.BGIv1.0 annot-version=v1.0 MAYRRRTQSMPSPWAASTPAFNSYDNQRDEDKKGRQIDQGARDSNSAATTGLAAKAIGASSAAQTSRDSSLSSAYATFPSSPSFSSIHSSSNASKNGTPT NESRRKKEGPVLRKGLNAISSSLNYIGNAVEEGLTKVENRTADIIQETRKHIRERPGGSTAENQTTSQSTAGLQPQVQGKVQQPQTQTELELQLKASRDV AMAMAAKAKLLLRELKTVKADLAFANQRCTQLEDENKVLRESRENGGNLEDDDLIRLQLESLLAEKARLAHENSVFARENRFLSEVVEYHQLTMQDVVYL DEGTEEVTEVYPVKVVSQTLSSAGAATSAEMSVGTNLVGSRETLVHPVPPPGLGMGTEQASR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01970			unknown protein		Lus10031947 [exp]	0	1
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	1.7	0.8737
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	2.0	0.8938
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10016573 [exp]	3.2	0.8685
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	5.2	0.8620
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	6.0	0.8596
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	6.6	0.8615
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	6.8	0.8322
AT5G25265			unknown protein		Lus10041028 [exp]	8.9	0.8617
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	11.2	0.8671
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	13.4	0.8517

Compare expression of checked genes

Lus10031947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.