Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68260 199 / 6e-65 Thioesterase superfamily protein (.1) AT1G68280 191 / 5e-62 Thioesterase superfamily protein (.1) AT1G35250 183 / 9e-59 Thioesterase superfamily protein (.1) AT1G35290 183 / 1e-58 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035152 [exp] 330 / 4e-116 AT1G68260 200 / 3e-65 Thioesterase superfamily protein (.1) Lus10035143 [exp] 253 / 2e-85 AT1G68260 239 / 8e-81 Thioesterase superfamily protein (.1) Lus10031959 [exp] 236 / 3e-80 AT1G68260 221 / 5e-75 Thioesterase superfamily protein (.1) Lus10031936 [exp] 52 / 1e-08 AT1G68260 50 / 2e-08 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123102 [exp] 208 / 6e-68 AT1G68260 237 / 6e-80 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10031948 pacid=23161303 polypeptide=Lus10031948 locus=Lus10031948.g ID=Lus10031948.BGIv1.0 annot-version=v1.0 ATGTTGCAGCAAGGAATTGTTTATAATTCCACTCCAAAAGTACAGCCGCCGACGCTTTCCGCCCCTCGTCATAACTGGCCTTCTGTCCACCGGCTGCCTA GACTCCGGCCGAGGCTCATTTCGCCGTCACGGTGGCGATCTTCCACAAGATGCAGCAGCAGTACCAGAGCGACCCCGGCTCCCGCACCTCTTGGTATCAA TGGTGGAACACACAGGATGACGGGGTTCCATGACATCGAAATGAAAGTACGAGACTACGAGCTTGATCAATATGGAGTTGTCAATAATGCTGTTTACGCC AGTTACTGTCATCATGCTCGTCACGACCTCCTAGAGAGAATTGGTCTTAGTGCCGATGCCATTGCCCGTACAGGCGACGCATTGGCACTCTCCGAGCTAT CTCTCAAGTTCATTGCCCCTCTCAAAAGTGGAGATAGGTTTGTTATGAGAGTGCGAGTCTCCGACTATTCTGCTGCCCGGTTTTACGTGGAGCATTTCAT ATTCAAGTTGCCAAACAATGAGGCCATATTGAAAGCAAAAGCAACGGCTGTTTGGCTGGATGGAAATTATAAGCCAGTTCGAATACCTGCAGAAGTTACA TCTAAACTTGCTCAGTTTCTCCCCCTTATTATTGAGGACTCTGGTCATTAA
AA sequence Show only first row Show all	>Lus10031948 pacid=23161303 polypeptide=Lus10031948 locus=Lus10031948.g ID=Lus10031948.BGIv1.0 annot-version=v1.0 MLQQGIVYNSTPKVQPPTLSAPRHNWPSVHRLPRLRPRLISPSRWRSSTRCSSSTRATPAPAPLGINGGTHRMTGFHDIEMKVRDYELDQYGVVNNAVYA SYCHHARHDLLERIGLSADAIARTGDALALSELSLKFIAPLKSGDRFVMRVRVSDYSAARFYVEHFIFKLPNNEAILKAKATAVWLDGNYKPVRIPAEVT SKLAQFLPLIIEDSGH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	0	1
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	1.7	0.9521
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	3.5	0.9483
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	4.9	0.9414
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	5.5	0.9240
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	6.3	0.9125
AT3G22250			UDP-Glycosyltransferase superf...		Lus10035452 [exp]	6.9	0.8751
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	7.1	0.9299
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	7.2	0.9374
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	8.5	0.9178
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	11.8	0.9080

Compare expression of checked genes

Lus10031948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.