Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038478 [exp] 387 / 5e-136 ND / Lus10023333 [exp] 382 / 5e-134 ND / Lus10005172 [exp] 177 / 5e-54 ND / Lus10038131 [exp] 103 / 2e-25 ND / Lus10022997 [exp] 48 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102400 [exp] 349 / 5e-121 ND / Potri.015G100500 [exp] 327 / 2e-112 ND / Potri.001G341700 [exp] 323 / 7e-111 ND / Potri.015G100600 [exp] 306 / 3e-104 ND / Potri.005G059400 [exp] 176 / 4e-53 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10031949 pacid=23161103 polypeptide=Lus10031949 locus=Lus10031949.g ID=Lus10031949.BGIv1.0 annot-version=v1.0 ATGGCAACAATATTCACAATCATCTTCCTTCTCTTTCTCAACCAGCAGGGACTGTCAGCTCAGCAGCTCCTCTTCAGGGACTACATCGGAGCAGAGGGCA AGAACGTCACCTTCTCCGACGTACCAATCAATCCCTCGATCGACTTCCACTTCATTCTCTCCTTCGCAATCGATTACTCCTCTTCCTCCTCTCACCCTTC CCCGACCAATGGTGTGTTCAAACCCTACTGGGACACCGAAAACCTCGGCCTTTTCCACGCCACCTCCCTCAAATCCTGGCACCCAAACGTCAAGCTCGCA ATGAGCCTCGGTGGAGACACCGTCGGTGACAACCACTACGTATTCTTCAAGCCCACGACCGTTGAAAGTTGGCTACACAACGCCATCCGTTCCATCACGG AGATCGTCAGCTTGTACAATCTGGACGGAATCGATATCGATTACGAGCATTTCGAGCCCGGTGTGGATACGAACGCATTCGTGGAGTGCATCGGCCAGCT TTTGTACCACTTGAAGAGCAAGCAAATCATCAAATTTGCATCCATAGCGCCGTTTGATGATGATGAAGTGCAGAGGCACTACATGGCGTTGTGGAACAAA TACGGCCATCTGATAGACTATGTCAACTTCCAGTTCTATGCGTACGACAAAGGGACCAATGTTCAGAATTTTCTCGAGTATTTCCATGAACAGAGCTCCA ATTACCCGGGAGGGAAGGTGCTGACGAGCTTTGGGACTGATGACAGCGGAGGATTGAGGCCGGCTGGAGGGTTCTTTGAGGCCTGTAACGAGCTGTGGAG GAAGAACATGTTTCACGGCATCTTCATTTGGTCTGCGGATGACTCGAAGAAGCTTTGTTTTCGTCCTGAAATAGACTCCCAAAATTTTCTACTGGCAGTG GAGCTGCAATAA
AA sequence Show only first row Show all	>Lus10031949 pacid=23161103 polypeptide=Lus10031949 locus=Lus10031949.g ID=Lus10031949.BGIv1.0 annot-version=v1.0 MATIFTIIFLLFLNQQGLSAQQLLFRDYIGAEGKNVTFSDVPINPSIDFHFILSFAIDYSSSSSHPSPTNGVFKPYWDTENLGLFHATSLKSWHPNVKLA MSLGGDTVGDNHYVFFKPTTVESWLHNAIRSITEIVSLYNLDGIDIDYEHFEPGVDTNAFVECIGQLLYHLKSKQIIKFASIAPFDDDEVQRHYMALWNK YGHLIDYVNFQFYAYDKGTNVQNFLEYFHEQSSNYPGGKVLTSFGTDDSGGLRPAGGFFEACNELWRKNMFHGIFIWSADDSKKLCFRPEIDSQNFLLAV ELQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031949 [exp]	0	1
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	1.0	0.8797
AT5G57670			Protein kinase superfamily pro...		Lus10019990 [exp]	3.9	0.8428
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10026461 [exp]	11.1	0.8531
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	17.4	0.7974
AT1G51080			unknown protein		Lus10034834 [exp]	24.6	0.8045
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	26.8	0.8199
AT5G01790			unknown protein		Lus10030550 [exp]	29.7	0.7660
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	37.6	0.8001
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	37.7	0.7901
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	37.8	0.8012

Compare expression of checked genes

Lus10031949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.