Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51170 332 / 5e-115 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035151 [exp] 414 / 3e-143 AT5G51170 306 / 7e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111628 [exp] 366 / 4e-128 AT5G51170 325 / 5e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [flax] [poplar] 2H PF09749 [flax] [poplar] HVSL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Lus10031950 pacid=23161209 polypeptide=Lus10031950 locus=Lus10031950.g ID=Lus10031950.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTCATAGCATCTTATGGAGATGATTCGTCCGATTCCGAATCCGAAGTTTCTCCTCCGCCGGAACCTGATTCAGCAACAGCTTCAAATACTC AATCGCCGCTTCAGCTTCCGCTTCCGCCACCTCCTATTTCGCTTCTTACGCCTCCTTCCAGTTCAATTGGAGCGGCGGATTATTTCCAACCTTGTCAGCC CAGTCGACTGAGAAGCTTTCCTCATGTGGAAGGTAACTACGCTTTGCACGTCTACATTCCGGTTCACATCCCTCCAGTGTCGAAGAAACAAGTGGTGCTG TTTCTGAAGAAAATTTCCCAACTTGTGCCTAATCTCCACGTCGTGGATGCCGATGTTCCGCTCAGCAGTTTGTGCAAGGATGAGTTAAAGCTGGAACAAG TTGCGTTAGGGAGAGAGTTTCATGTTAGTCTTGGGAGGACTGTTCCCATTCGGGTTCATCAGATTGATTCGGTGGTCGCTATGCTTCGCCAGAAGCTTCA GTCTCAGAAGCGGTACTGGATTGATTTCAACAAGTGGGAGGTTTTTGTTAATGATGATCAAACACGCACTTTTCTCTCGATTGAAGTGGTTACAGGGGGG CTAGCTGAGATTACTAAACAGATTAATTCTGTTAATGAGGTTTACATGCTACACAATCTTCCAGAGTTCTATAAGGATCCACGTCCGCATATATCTTTGG CATGGGCATTGGCAGACATCAGTGATTCATTCAAGAGAGTAATAGCTGAAGAAGAAGTGAAGAGATCCAGGATTGCAGGTTCAGTCCCGAATCGTGTATT TACTTGTAAATTTAGTGGTATTGTGTGTAAAGTTGGTAGTAAGACATTCAAGATATGTAAACTCAATGATGATTAA
AA sequence Show only first row Show all	>Lus10031950 pacid=23161209 polypeptide=Lus10031950 locus=Lus10031950.g ID=Lus10031950.BGIv1.0 annot-version=v1.0 MEALIASYGDDSSDSESEVSPPPEPDSATASNTQSPLQLPLPPPPISLLTPPSSSIGAADYFQPCQPSRLRSFPHVEGNYALHVYIPVHIPPVSKKQVVL FLKKISQLVPNLHVVDADVPLSSLCKDELKLEQVALGREFHVSLGRTVPIRVHQIDSVVAMLRQKLQSQKRYWIDFNKWEVFVNDDQTRTFLSIEVVTGG LAEITKQINSVNEVYMLHNLPEFYKDPRPHISLAWALADISDSFKRVIAEEEVKRSRIAGSVPNRVFTCKFSGIVCKVGSKTFKICKLNDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51170			unknown protein		Lus10031950 [exp]	0	1
AT2G45060			Uncharacterised conserved prot...		Lus10028177 [exp]	8.5	0.8605
AT4G19950			unknown protein		Lus10018322 [exp]	8.7	0.8337
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	12.1	0.7950
AT1G22490	bHLH	bHLH094	basic helix-loop-helix (bHLH) ...		Lus10000332 [exp]	18.5	0.8289
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	24.4	0.8365
AT1G65900			unknown protein		Lus10020799 [exp]	49.7	0.8073
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10016508 [exp]	51.0	0.8102
AT2G15270			unknown protein		Lus10002814 [exp]	53.1	0.8214
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	54.3	0.8191
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	61.8	0.8152

Compare expression of checked genes

Lus10031950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.